RNA id: XR_004578977.1


Basic Information

Item Value
RNA id XR_004578977.1
length 1560
lncRNA type inter_gene
GC content 0.39
exon number 4
gene id LOC113534053
representative True

Chromosome Information

Item Value
chromosome id NC_047604.1
NCBI id CM018550.1
chromosome length 29376037
location 28236673 ~ 28244726 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

caaacacaccatCAGCTCAGACAAGCTCCAAGCAATTCAGGCGAAAATGAGCTTCGGGAAAGCAAATATGCTCAGAATTTTAATGGCATGTGACACCTGATCACGGAGCTGACTGCGTGCACAAGATTAGCATCAGCGAGACAGACACTTATTCAGAAGTGAGACCTGAAACATATCGTCTGTGTCAGGAGTGTCGGGGTGCCAGGGGTGTGACATCACACGCACAGCTTGTAAAAACAGAACGTATGCTTGTTGTTTTACATGACTGAGGAAAATCCTGTGACATTTCTTCTTTACATGGATGTATTGTAGTCCCTTGAAATACATAGAAGTATGTATGATTTTATCTGTgttatgtttaaattaataaagcTAGGAACTGCTTTAACACTAAGGAACGCAAGTTAATATACAGGTCTCGCATAAGTTCATCTTTCCCACATTGTGTAGAGATCAGAAAAGGAATTAATTTGGAttatataacacacacctgggACATTACACCTCCACACCAGCAGAGGTCGCCTGAGTACTGAGGAATTGCCTTCCACACTCACAACTTCCTGTTAACTTCCTGGTTTAGCATATATAAGTATAGATACCAATTTCAAGAGGTGTTTGAAGTGGTGTTTGGATCAGTGTTTGGAGAAGTGTTTGGAGCAGCATGCCGTGAATTTTCAAGACCCAGCAACAAGGCATTGCTTCTCACAACACATCTGTTCATTACTGCTTCACCTCACTGTAAACTGAACTCCTGGACATGGACTACATACACGCCTATGGAACTCGTACTAGAGTGACTCAAGTCATTCGAGTCTGTTTACACGGATTCGCTCACTGACTCGCTCAGTCGCATGGTTTGCAAAAATGTGTAGCTAAcagcgagtgtgtgtgtacgctcTTAAGCCAGAGCAGTGTCTGATGTCGCACATGGACGGTTCTCTCTGATTATGTTTACAGCCGGGACCATTAGGGGACTTGATTATGCATAATGGAACAGAGTGTAAAGTTTCTCATGACGGAAGAAAACATTTGCGGTTCGATTGGGAAGTTACCGTGTTTCATGCCGAGTCAGTCGTTATTGTTGTGACTCGAGAAGGAGGCGACAGAAACCAGCGTGACCTTTGCAGGTTCCTGACAAAATCTGTTCCTATGTAGTGATATGCACTTTTTATCTAATTTTGCATAAccccaaattattattattattttgtaaaacatgttttataGCAAGTTTTTCAGCAATAAAATATTGTCATGAATCATTTAGGAGATCCCaaaacaaaagatttttaaaaatgaaaaataaatgtttactaaATAAACCTTACAGCTAAATGTAACAAGGAACTATTTACACTATTTAcgcatttttaatatgttttaaattgaatttgttATGGAATCAAcactgtgtgttgctgttaaaGTAAAATCCTCAACAACGGggtgaagtgatgaagtggagcGAGTGTTttcaccctaaagttgattattttcctataatagcatgttaTAGCatcctataatagcatgtaaaagtgttttattcctcttata

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU204603 lncRNA upstream 44761 28148577 ~ 28191912 (+) True G172873
TU204550 lncRNA upstream 113841 28119062 ~ 28122832 (+) True G172830
TU204586 lncRNA upstream 128008 28101507 ~ 28108665 (+) True G172858
TU204556 lncRNA upstream 165592 28028000 ~ 28071081 (+) False LOC113533782
TU204439 lncRNA upstream 394490 27840986 ~ 27842183 (+) True G172741
XR_004579037.1 lncRNA downstream 145242 28389196 ~ 28435398 (+) True LOC117598375
TU204884 lncRNA downstream 287505 28531459 ~ 28531691 (+) True G173106
TU204932 lncRNA downstream 526071 28770025 ~ 28772065 (+) True G173140
TU204941 lncRNA downstream 554213 28798167 ~ 28807149 (+) True G173143
TU204959 lncRNA downstream 576546 28820500 ~ 28825365 (+) True G173154
XM_034308145.1 mRNA upstream 11019 28217692 ~ 28225654 (+) True jkamp
XM_026926569.2 mRNA upstream 27811 28181100 ~ 28208862 (+) True daam1a
XM_034308120.1 mRNA upstream 27811 28194270 ~ 28208862 (+) False daam1a
XM_026926050.2 mRNA upstream 66110 28166153 ~ 28170563 (+) True sdsl
XM_034308247.1 mRNA downstream 197048 28441002 ~ 28477245 (+) True LOC117598320
XM_034308125.1 mRNA downstream 451024 28694978 ~ 28716687 (+) True ctage5
XM_034308126.1 mRNA downstream 451024 28694978 ~ 28716687 (+) False ctage5
XM_026926500.2 mRNA downstream 454690 28698644 ~ 28716687 (+) False ctage5
XM_034307928.1 mRNA downstream 486475 28730429 ~ 28735890 (+) True fam177a1
trnak-uuu_7 other upstream 511394 27725207 ~ 27725279 (+) True trnak-uuu_7
XR_003403449.2 other upstream 771024 27156343 ~ 27465649 (+) False nrxn3a
XR_003403450.2 other upstream 771024 27156343 ~ 27465649 (+) False nrxn3a
XR_003403451.2 other upstream 771024 27156343 ~ 27465649 (+) False nrxn3a
trnat-ugu_12 other upstream 1321243 26915358 ~ 26915430 (+) True trnat-ugu_12
TU205054 other downstream 825766 29069720 ~ 29073089 (+) True G173221
TU205058 other downstream 849537 29093491 ~ 29138776 (+) False nrde2

Expression Profile