RNA id: XR_003403481.2


Basic Information

Item Value
RNA id XR_003403481.2
length 2024
lncRNA type inter_gene
GC content 0.40
exon number 3
gene id LOC113534208
representative True

Chromosome Information

Item Value
chromosome id NC_047604.1
NCBI id CM018550.1
chromosome length 29376037
location 26916818 ~ 26920537 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

cctgaaaagagttgACGAAAGTGCTAAAGACTTTACTTCAGGGAAAAGGctgaaaaaattgaaaatatattcCACTTTGGAGTGATGGATTTGGCAGCTCACGGGTGAGCTACCAGAGAAGAAGaacaggagatgtttattttattttattttttattttattttatttagtttatttattttatttagtcgCGCGCGCCTCAACCTGGCTGACAGTTCCAAGATTATAGGTTATGAAAGATGTTCGTTCCTTCACTCAACCCTCTTACATGAGCACGTTTCTTCTGCTGTGAAATATTTGGattattccacaagtcacatgttcaacaggaagttcaACAGCATTtgctgaagatcatgggaagaagaaaaTGAAATCCAGCACTCAAGAGATGTTTATCGTTGACCCGTCATGCTCTGTGCCACACAGCTGACCTTGACGATTCCCATTCTTCTGTCACGGTGGGAGAAGATAACTCAACTGGTTCTTGAGAGAATGGATTGGATCTGTTGTAGGACAGAGCTGTAAACATAGACCTCCCATTGTTTCATAAGCGGAGTTGACCTGATGTTTGCGGATGACGCCACCCCTGGACCTTagcactgtttattttcttaattgCTGCTTTATGCTTGTGTTTGTCAAGCTTTTACAGCAGTCGTCCCCTGATTCCAAACGACTCCACATGCCAATCTGATCAGCCAGGAATGTGAGCAGGCATGCAGCGTTTGAGAAAAGCAGGTGGGCTCCTTCAGCTCACGTCAAATGACCTCCATGGTTGAAGAAATCTGCATTTCTGAATGCAttgaatgaaggaaaaaagcaAGTAATGGCTACACACGACTGCTCCTTCCCTAATCTAGAGTCCTCCTTAACTAACAGGAGGTTTCACTTGTGTTGAGAGATGGGGAGGAGATGATACCAAGAAGGGACGGACCTCAAACTGTGAGTAAACAGCTGCATGTAGGATCAATTTCCAGCTTGGGGACAGATTCATCTCGAACCCCTGATCTCACTCGCTGATCCTGTCACTGCTCTCCTATTTATAGACAAGACAGACTTTCAAAAGATAAAAACCTCTGCTTTTTACTGATCAGATcaatttcatacttttttatgAAGTGGATATACTTAGTAACTCGGATTAAAACTTGTGATGGTTGCTAATGTGCAGTATGAGAGGTACTAGAGGTAttgaactaattttttttttttttttgttaccagATTGTGACTTATAGGAAAATGTGGTGTTTTCAACTTAAAGCTtgtgttttagctagctagtgtatCGAATTTGTGCTTTGTTCTGATCTCGCAAAAATTGAACACATATAAATATGACCTGCAAATAGGTACAAAACTCAGCTCTGTAGCTTATGGTCGATTACCGTGTACAAATATTCCAAGAATTTTTGAGAAAACAGACAACTCATGTAGTGGATGTCTAAGGGGAATTATTGATATCCGTCAATAAAGGTTGCAAAACGTATTTTTGTAAAACCCTTTCATGAATCCTTCAGTCGTAGGTGAAGGAAGTACCTGTATAATTCATCCTTTCAGAGACAGAACTACTTTTTCTGAAGGAAGACTTGGTAATGTGCTTTCTGCCAGGGTAGATGTGTGGCTCTGATGGTGCATGGATACCACAAAACCTTCAAGAAAACACAAGTAACCGGAACTACTTTTACTATTTTGCGCCAATTTTAGAAAGTTGACGCACTCTAATTACAAGAAAGAGACCGATATGCTGAATGAAAAGCGGTGGTGTTGGGCCAACATGGCTGTTATGATTGAACTCAATTTGAAAGAGAAGGTGGAACTGTGTGAACGGTTTTAACATTTGcttcttttccattttcagcAAAGAACATAACAACGTAAAAATTTCCTTAACAGATTTCCTTTTCAAATCAACTTaattatttctgtgtttttctacGTTTCATCTGTATAAACCTGATCCTCCAGACACTCAGAGAGGCCCATGTGTCTGGCCGACTGTTAATAATGTTCTCTTCTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU203819 lncRNA downstream 46467 26870347 ~ 26870619 (-) True G172211
TU203813 lncRNA downstream 87357 26829318 ~ 26829729 (-) True G172207
TU203802 lncRNA downstream 144036 26772132 ~ 26773050 (-) True G172196
TU203600 lncRNA downstream 321603 26595281 ~ 26595483 (-) True G172016
TU203440 lncRNA downstream 858577 26058245 ~ 26058509 (-) True G171874
TU203838 lncRNA upstream 57929 26978466 ~ 27052034 (-) True G172225
TU204297 lncRNA upstream 545335 27465872 ~ 27491804 (-) True G172635
TU204334 lncRNA upstream 644768 27565305 ~ 27566560 (-) False foxn3
TU204374 lncRNA upstream 804024 27724561 ~ 27725757 (-) False efcab11
XR_004578961.1 lncRNA upstream 844068 27764605 ~ 27768101 (-) True LOC117598276
XM_026926508.2 mRNA downstream 18778 26846846 ~ 26898308 (-) True ccdc85ca
XM_034308270.1 mRNA downstream 71951 26818900 ~ 26845135 (-) False setd3
XM_034308271.1 mRNA downstream 72091 26818900 ~ 26844995 (-) True setd3
XM_026926840.2 mRNA downstream 122167 26741374 ~ 26794919 (-) False bcl11ba
XM_026926758.2 mRNA upstream 9124 26929661 ~ 26955838 (-) True ism2a
XM_034308244.1 mRNA upstream 39286 26959823 ~ 26989620 (-) True sptlc2a
XM_026926575.2 mRNA upstream 77894 26998431 ~ 27003962 (-) True alkbh1
XM_026925974.2 mRNA upstream 562344 27482881 ~ 27489113 (-) True dio2
XM_026926481.2 mRNA upstream 608326 27528863 ~ 27557994 (-) False ston2
TU203284 other downstream 1334559 25578939 ~ 25582527 (-) True G171734
TU203074 other downstream 1657724 25258839 ~ 25259362 (-) True G171569
TU203072 other downstream 1657877 25258839 ~ 25259209 (-) False G171569
TU202681 other downstream 2109991 24801083 ~ 24807095 (-) False G171256
TU201673 other downstream 4053319 22855494 ~ 22863767 (-) True G170435
TU204658 other upstream 978954 27899491 ~ 27910890 (-) True si:ch73-204p21.2
TU204659 other upstream 978954 27899491 ~ 27910890 (-) False si:ch73-204p21.2
TU204662 other upstream 991700 27912237 ~ 27912544 (-) True G172919
TU205159 other upstream 1916355 28836892 ~ 29050026 (-) True G173287
XR_004578919.1 other upstream 1980367 28900904 ~ 28908552 (-) False stmn4l

Expression Profile