Gene
RNA
| Item | Value |
|---|---|
| RNA id | XR_004578992.1 |
| length | 1206 |
| lncRNA type | inter_gene |
| GC content | 0.42 |
| exon number | 4 |
| gene id | LOC113534208 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_047604.1 |
| NCBI id | CM018550.1 |
| chromosome length | 29376037 |
| location | 26916818 ~ 26920537 (-) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU203819 | lncRNA | downstream | 46199 | 26870347 ~ 26870619 (-) | True | G172211 |
| TU203813 | lncRNA | downstream | 87089 | 26829318 ~ 26829729 (-) | True | G172207 |
| TU203802 | lncRNA | downstream | 143768 | 26772132 ~ 26773050 (-) | True | G172196 |
| TU203600 | lncRNA | downstream | 321335 | 26595281 ~ 26595483 (-) | True | G172016 |
| TU203440 | lncRNA | downstream | 858309 | 26058245 ~ 26058509 (-) | True | G171874 |
| TU203838 | lncRNA | upstream | 57929 | 26978466 ~ 27052034 (-) | True | G172225 |
| TU204297 | lncRNA | upstream | 545335 | 27465872 ~ 27491804 (-) | True | G172635 |
| TU204334 | lncRNA | upstream | 644768 | 27565305 ~ 27566560 (-) | False | foxn3 |
| TU204374 | lncRNA | upstream | 804024 | 27724561 ~ 27725757 (-) | False | efcab11 |
| XR_004578961.1 | lncRNA | upstream | 844068 | 27764605 ~ 27768101 (-) | True | LOC117598276 |
| XM_026926508.2 | mRNA | downstream | 18510 | 26846846 ~ 26898308 (-) | True | ccdc85ca |
| XM_034308270.1 | mRNA | downstream | 71683 | 26818900 ~ 26845135 (-) | False | setd3 |
| XM_034308271.1 | mRNA | downstream | 71823 | 26818900 ~ 26844995 (-) | True | setd3 |
| XM_026926840.2 | mRNA | downstream | 121899 | 26741374 ~ 26794919 (-) | False | bcl11ba |
| XM_026926839.2 | mRNA | downstream | 121899 | 26741374 ~ 26794919 (-) | True | bcl11ba |
| XM_026926758.2 | mRNA | upstream | 9124 | 26929661 ~ 26955838 (-) | True | ism2a |
| XM_034308244.1 | mRNA | upstream | 39286 | 26959823 ~ 26989620 (-) | True | sptlc2a |
| XM_026926575.2 | mRNA | upstream | 77894 | 26998431 ~ 27003962 (-) | True | alkbh1 |
| XM_026925974.2 | mRNA | upstream | 562344 | 27482881 ~ 27489113 (-) | True | dio2 |
| XM_026926481.2 | mRNA | upstream | 608326 | 27528863 ~ 27557994 (-) | False | ston2 |
| TU203284 | other | downstream | 1334291 | 25578939 ~ 25582527 (-) | True | G171734 |
| TU203074 | other | downstream | 1657456 | 25258839 ~ 25259362 (-) | True | G171569 |
| TU203072 | other | downstream | 1657609 | 25258839 ~ 25259209 (-) | False | G171569 |
| TU202681 | other | downstream | 2109723 | 24801083 ~ 24807095 (-) | False | G171256 |
| TU201673 | other | downstream | 4053051 | 22855494 ~ 22863767 (-) | True | G170435 |
| TU204658 | other | upstream | 978954 | 27899491 ~ 27910890 (-) | True | si:ch73-204p21.2 |
| TU204659 | other | upstream | 978954 | 27899491 ~ 27910890 (-) | False | si:ch73-204p21.2 |
| TU204662 | other | upstream | 991700 | 27912237 ~ 27912544 (-) | True | G172919 |
| TU205159 | other | upstream | 1916355 | 28836892 ~ 29050026 (-) | True | G173287 |
| XR_004578919.1 | other | upstream | 1980367 | 28900904 ~ 28908552 (-) | False | stmn4l |
