Gene
RNA
| Item | Value |
|---|---|
| RNA id | XR_003403895.1 |
| length | 107 |
| RNA type | ncRNA |
| GC content | 0.45 |
| exon number | 1 |
| gene id | LOC113539017 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047604.1 |
| NCBI id | CM018550.1 |
| chromosome length | 29376037 |
| location | 18319970 ~ 18320076 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU198351 | lncRNA | upstream | 31663 | 18286202 ~ 18288307 (+) | True | G167546 |
| TU198218 | lncRNA | upstream | 192603 | 18126435 ~ 18127367 (+) | True | G167428 |
| TU198182 | lncRNA | upstream | 230156 | 18089604 ~ 18089814 (+) | True | G167395 |
| XR_003403868.2 | lncRNA | upstream | 231973 | 18072175 ~ 18087997 (+) | True | LOC113538631 |
| TU198046 | lncRNA | upstream | 331554 | 17924713 ~ 17988416 (+) | False | G167271 |
| TU198362 | lncRNA | downstream | 55906 | 18375982 ~ 18376347 (+) | True | G167557 |
| TU198361 | lncRNA | downstream | 57358 | 18377434 ~ 18378760 (+) | True | G167556 |
| TU198457 | lncRNA | downstream | 138363 | 18458439 ~ 18458992 (+) | True | G167636 |
| TU198437 | lncRNA | downstream | 139422 | 18459498 ~ 18470004 (+) | True | G167621 |
| TU198486 | lncRNA | downstream | 193663 | 18513739 ~ 18513997 (+) | True | G167665 |
| XM_026933937.2 | mRNA | upstream | 3588 | 18293819 ~ 18316382 (+) | True | apoba |
| XM_026933938.2 | mRNA | upstream | 3588 | 18296398 ~ 18316382 (+) | False | apoba |
| XM_026933959.2 | mRNA | upstream | 132608 | 18132424 ~ 18187362 (+) | True | nhsl1a |
| XM_026933960.2 | mRNA | upstream | 132608 | 18149672 ~ 18187362 (+) | False | nhsl1a |
| XM_026933962.2 | mRNA | upstream | 132608 | 18151924 ~ 18187362 (+) | False | nhsl1a |
| XM_034308009.1 | mRNA | downstream | 10391 | 18330467 ~ 18370028 (+) | False | ldah |
| XM_026933899.2 | mRNA | downstream | 10392 | 18330468 ~ 18374080 (+) | True | ldah |
| XM_026934402.2 | mRNA | downstream | 68029 | 18388105 ~ 18396271 (+) | True | tpp1 |
| XM_026933742.2 | mRNA | downstream | 88014 | 18408090 ~ 18414404 (+) | True | degs2 |
| XM_026933878.2 | mRNA | downstream | 215258 | 18535334 ~ 18551703 (+) | True | disp2 |
| XR_004579004.1 | other | upstream | 393950 | 17925706 ~ 17926020 (+) | True | LOC117598336 |
| XR_004578941.1 | other | upstream | 404983 | 17876601 ~ 17914987 (+) | True | kidins220a |
| TU197931 | other | upstream | 613138 | 17700500 ~ 17706832 (+) | False | itgb1bp1 |
| TU197685 | other | upstream | 1263159 | 17055674 ~ 17056811 (+) | True | G166976 |
| XR_004578942.1 | other | upstream | 1356358 | 16953173 ~ 16963612 (+) | False | asxl2 |
| XR_004578955.1 | other | downstream | 10392 | 18330468 ~ 18371971 (+) | False | ldah |
| TU199111 | other | downstream | 1354837 | 19674913 ~ 19687591 (+) | True | G168191 |
| TU199113 | other | downstream | 1359239 | 19679315 ~ 19687591 (+) | False | G168191 |
| XR_004578946.1 | other | downstream | 1559659 | 19879735 ~ 19886509 (+) | True | zfyve19 |
| XR_004578926.1 | other | downstream | 1593557 | 19913633 ~ 19922401 (+) | True | LOC113538658 |
