RNA id: XR_004578930.1


Basic Information

Item Value
RNA id XR_004578930.1
length 206
lncRNA type inter_gene
GC content 0.49
exon number 3
gene id LOC117598233
representative True

Chromosome Information

Item Value
chromosome id NC_047604.1
NCBI id CM018550.1
chromosome length 29376037
location 29053136 ~ 29054210 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CGACTCCTAGCGTTCACCCACGATTCAATGAACCTATTCAAAGAATCGATTCACTAAGCTTCACTGAACCTGTATCTCATCAGACAAACAGCAGAAagggaGCGTGACGCTGGGAGTCGCTGTATTGTCGCTATGAGCAGTAACAGTagggaGCGTGACGCTGGGAGTCGCTGTATTGTCGCTATGAGCAGTAACAGTGTGAGTAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU205028 lncRNA upstream 59666 28990797 ~ 28993470 (+) True G173209
TU205026 lncRNA upstream 63430 28989119 ~ 28989706 (+) True G173208
TU205027 lncRNA upstream 63430 28989354 ~ 28989706 (+) False G173208
TU205007 lncRNA upstream 79707 28914092 ~ 28973429 (+) True G173198
TU205051 lncRNA downstream 9972 29064182 ~ 29173464 (+) False LOC117598323
TU205043 lncRNA downstream 12632 29066842 ~ 29138878 (+) False kif28
TU205052 lncRNA downstream 17322 29071532 ~ 29073089 (+) False G173221
TU205036 lncRNA downstream 25027 29079237 ~ 29080134 (+) True G173215
TU205062 lncRNA downstream 63114 29117324 ~ 29119753 (+) True G173228
XM_034307949.1 mRNA upstream 1697 29028670 ~ 29051439 (+) True ahctf1
XM_026911914.2 mRNA upstream 26898 29008520 ~ 29026238 (+) True snap25b
XM_034308360.1 mRNA upstream 46370 28997024 ~ 29006766 (+) True ankef1b
XM_026911907.2 mRNA upstream 69267 28968131 ~ 28983869 (+) True emilin1b
XM_026926871.2 mRNA upstream 154533 28895892 ~ 28898603 (+) True il17a/f1
XM_034308248.1 mRNA downstream 23 29054233 ~ 29067337 (+) True kif28
XM_034308216.1 mRNA downstream 21392 29075602 ~ 29087181 (+) True ttc7b
XM_034308217.1 mRNA downstream 22517 29076727 ~ 29086819 (+) False ttc7b
XM_034308218.1 mRNA downstream 23224 29077434 ~ 29086819 (+) False ttc7b
XM_034308249.1 mRNA downstream 39254 29093464 ~ 29099364 (+) True nrde2
trnak-uuu_7 other upstream 1327857 27725207 ~ 27725279 (+) True trnak-uuu_7
XR_003403449.2 other upstream 1587487 27156343 ~ 27465649 (+) False nrxn3a
XR_003403450.2 other upstream 1587487 27156343 ~ 27465649 (+) False nrxn3a
XR_003403451.2 other upstream 1587487 27156343 ~ 27465649 (+) False nrxn3a
trnat-ugu_12 other upstream 2137706 26915358 ~ 26915430 (+) True trnat-ugu_12
TU205054 other downstream 15510 29069720 ~ 29073089 (+) True G173221
TU205058 other downstream 39281 29093491 ~ 29138776 (+) False nrde2

Expression Profile