Gene
RNA
| Item | Value |
|---|---|
| RNA id | XR_004578936.1 |
| length | 663 |
| lncRNA type | inter_gene |
| GC content | 0.54 |
| exon number | 3 |
| gene id | LOC117598237 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047604.1 |
| NCBI id | CM018550.1 |
| chromosome length | 29376037 |
| location | 23201694 ~ 23229156 (-) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU201842 | lncRNA | downstream | 51610 | 23148743 ~ 23150084 (-) | False | greb1 |
| TU201819 | lncRNA | downstream | 95749 | 23105235 ~ 23105945 (-) | True | G170558 |
| TU201717 | lncRNA | downstream | 209792 | 22986696 ~ 22991902 (-) | True | G170477 |
| TU201718 | lncRNA | downstream | 215072 | 22985083 ~ 22986622 (-) | True | G170478 |
| TU201716 | lncRNA | downstream | 217333 | 22983951 ~ 22984361 (-) | True | G170476 |
| TU202102 | lncRNA | upstream | 475140 | 23704296 ~ 23704511 (-) | True | G170782 |
| TU202118 | lncRNA | upstream | 489389 | 23718545 ~ 23718769 (-) | True | G170795 |
| TU202098 | lncRNA | upstream | 490955 | 23720111 ~ 23744432 (-) | True | G170779 |
| TU202129 | lncRNA | upstream | 547399 | 23776555 ~ 23777311 (-) | True | G170805 |
| TU202111 | lncRNA | upstream | 548823 | 23777979 ~ 23779234 (-) | True | G170788 |
| XM_026926020.2 | mRNA | downstream | 22183 | 23148881 ~ 23179511 (-) | True | greb1 |
| XM_026926404.2 | mRNA | downstream | 53956 | 23113368 ~ 23147738 (-) | False | lpin1 |
| XM_026926407.2 | mRNA | downstream | 61515 | 23113368 ~ 23140179 (-) | False | lpin1 |
| XM_026926408.2 | mRNA | downstream | 61515 | 23113368 ~ 23140179 (-) | True | lpin1 |
| XM_026926433.2 | mRNA | downstream | 367702 | 22767942 ~ 22833992 (-) | False | LOC113533941 |
| XM_034307870.1 | mRNA | upstream | 5437 | 23234593 ~ 23265065 (-) | False | spata17 |
| XM_026926813.2 | mRNA | upstream | 5843 | 23234999 ~ 23265065 (-) | True | spata17 |
| XM_026926814.2 | mRNA | upstream | 6036 | 23235192 ~ 23265065 (-) | False | spata17 |
| XM_034308327.1 | mRNA | upstream | 492638 | 23721794 ~ 23735252 (-) | True | kctd3 |
| XM_026926007.2 | mRNA | upstream | 510863 | 23740019 ~ 23760260 (-) | True | ptpreb |
| TU201673 | other | downstream | 337927 | 22855494 ~ 22863767 (-) | True | G170435 |
| TU201211 | other | downstream | 1085818 | 22115565 ~ 22115876 (-) | True | G170023 |
| TU200304 | other | downstream | 2384478 | 20814561 ~ 20817216 (-) | False | grem1b |
| XR_003403127.1 | other | downstream | 2468642 | 20732930 ~ 20733052 (-) | True | LOC113530231 |
| TU200198 | other | downstream | 2635895 | 20564929 ~ 20565799 (-) | True | G169119 |
| TU202681 | other | upstream | 1571927 | 24801083 ~ 24807095 (-) | False | G171256 |
| TU203072 | other | upstream | 2029683 | 25258839 ~ 25259209 (-) | False | G171569 |
| TU203074 | other | upstream | 2029683 | 25258839 ~ 25259362 (-) | True | G171569 |
| TU203284 | other | upstream | 2349783 | 25578939 ~ 25582527 (-) | True | G171734 |
| TU204658 | other | upstream | 4670335 | 27899491 ~ 27910890 (-) | True | si:ch73-204p21.2 |
