RNA id: XR_004578969.1


Basic Information

Item Value
RNA id XR_004578969.1
length 378
lncRNA type inter_gene
GC content 0.47
exon number 3
gene id LOC117598286
representative True

Chromosome Information

Item Value
chromosome id NC_047604.1
NCBI id CM018550.1
chromosome length 29376037
location 22416176 ~ 22416851 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CTAGAATTAGAGCTGAGCTAGATCCCACATGTGACAGATGTAAACAAGGTCCTGCAAACCTAATACATATGTTTTGAAGACTGCAGGACTCTCCTCCCGAATGCATATGTTCAAGAGCTGCTCTTAGCCTGAACCTGAGAACAGCTTTGGATGGGATGGCGAGATGTCATCAATTCTGCATCTTCTCCCCCAAACATCAAGAGGGCATTAAAAAACAGCGAAGATTGGTTTGGCTCAAGCTGGAAAGAATCTCGTGAGTGGCCACAGGAAGGAGCCAGTCTCACTACCTTCCTTGAGCAAGCTGAAGCAAGACACCCCTTCCTCCTGTGCACTAGTGAGCAAAAGAATAAAATCGGACGGTTCTGCATCGTCCTTGAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004579042.1 lncRNA upstream 4814 22411162 ~ 22411362 (+) True LOC113530233
TU201277 lncRNA upstream 30026 22385939 ~ 22386150 (+) True G170083
XR_004578968.1 lncRNA upstream 44976 22349056 ~ 22371200 (+) True LOC117598285
TU201270 lncRNA upstream 68016 22314691 ~ 22348160 (+) True G170078
TU201266 lncRNA upstream 102811 22309505 ~ 22313365 (+) True G170075
TU201469 lncRNA downstream 340389 22757240 ~ 22757444 (+) True G170260
TU201470 lncRNA downstream 342390 22759241 ~ 22759476 (+) True G170261
TU201475 lncRNA downstream 348872 22765723 ~ 22767755 (+) True G170266
TU201477 lncRNA downstream 348872 22765723 ~ 22767700 (+) False G170266
TU201558 lncRNA downstream 566113 22982964 ~ 22983351 (+) True G170323
XM_026919102.2 mRNA upstream 161908 22241018 ~ 22254268 (+) True LOC113529714
XM_034307809.1 mRNA downstream 444956 22861807 ~ 23022395 (+) False LOC113533992
XM_034307804.1 mRNA downstream 444956 22861807 ~ 22982148 (+) False LOC113533992
XM_034307806.1 mRNA downstream 444956 22861807 ~ 22982148 (+) False LOC113533992
XM_034307808.1 mRNA downstream 444956 22861807 ~ 22982148 (+) False LOC113533992
XM_034307810.1 mRNA downstream 444957 22861808 ~ 23022395 (+) False LOC113533992
TU200872 other upstream 596117 21819281 ~ 21820059 (+) True G169692
TU200725 other upstream 741715 21669907 ~ 21674461 (+) True G169577
XR_004578912.1 other upstream 1884954 20528519 ~ 20531222 (+) False LOC113530103
XR_004578924.1 other downstream 444956 22861807 ~ 23022395 (+) False LOC113533992
XR_004578925.1 other downstream 444959 22861810 ~ 23022395 (+) False LOC113533992
TU201530 other downstream 445176 22862027 ~ 22890770 (+) True LOC113533992
trnah-gug_10 other downstream 1545133 23961984 ~ 23962055 (+) True trnah-gug_10
trnah-gug_11 other downstream 1547997 23964848 ~ 23964919 (+) True trnah-gug_11

Expression Profile