Gene
RNA
| Item | Value |
|---|---|
| RNA id | XR_004578986.1 |
| length | 621 |
| lncRNA type | inter_gene |
| GC content | 0.44 |
| exon number | 3 |
| gene id | LOC117598313 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047604.1 |
| NCBI id | CM018550.1 |
| chromosome length | 29376037 |
| location | 24028325 ~ 24034062 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU202239 | lncRNA | upstream | 16976 | 24010349 ~ 24011349 (+) | True | G170893 |
| TU202008 | lncRNA | upstream | 199139 | 23827063 ~ 23829186 (+) | True | G170718 |
| TU202006 | lncRNA | upstream | 246236 | 23779323 ~ 23782089 (+) | True | G170716 |
| TU202007 | lncRNA | upstream | 249098 | 23778269 ~ 23779227 (+) | True | G170717 |
| TU201871 | lncRNA | upstream | 652887 | 23375238 ~ 23375438 (+) | True | G170610 |
| TU202251 | lncRNA | downstream | 1722 | 24035784 ~ 24036171 (+) | True | G170904 |
| TU202374 | lncRNA | downstream | 273792 | 24307854 ~ 24308329 (+) | True | G171017 |
| TU202376 | lncRNA | downstream | 275568 | 24309630 ~ 24309966 (+) | True | G171019 |
| TU202378 | lncRNA | downstream | 283472 | 24317534 ~ 24318066 (+) | True | G171021 |
| TU202527 | lncRNA | downstream | 411541 | 24445603 ~ 24450067 (+) | True | G171135 |
| XM_026926430.2 | mRNA | upstream | 30283 | 23988758 ~ 23998042 (+) | True | ctsba |
| XM_026926208.2 | mRNA | upstream | 45690 | 23979390 ~ 23982635 (+) | True | LOC113533835 |
| XM_026926068.2 | mRNA | upstream | 118690 | 23894848 ~ 23909635 (+) | True | wdr25 |
| XM_026926864.2 | mRNA | upstream | 144603 | 23879309 ~ 23883722 (+) | True | slc25a47b |
| XM_034308067.1 | mRNA | upstream | 164192 | 23820846 ~ 23864133 (+) | False | fancm |
| XM_026926612.2 | mRNA | downstream | 199296 | 24233358 ~ 24235125 (+) | True | pomca |
| XM_026925957.2 | mRNA | downstream | 204595 | 24238657 ~ 24246890 (+) | False | dnajc27 |
| XM_026925956.2 | mRNA | downstream | 204608 | 24238670 ~ 24246890 (+) | True | dnajc27 |
| XM_026926524.2 | mRNA | downstream | 218799 | 24252861 ~ 24282623 (+) | True | xdh |
| XM_034308243.1 | mRNA | downstream | 218858 | 24252920 ~ 24282623 (+) | False | xdh |
| trnay-aua | other | upstream | 63219 | 23965034 ~ 23965106 (+) | True | trnay-aua |
| trnah-gug_11 | other | upstream | 63406 | 23964848 ~ 23964919 (+) | True | trnah-gug_11 |
| trnah-gug_10 | other | upstream | 66270 | 23961984 ~ 23962055 (+) | True | trnah-gug_10 |
| XR_004578925.1 | other | upstream | 1005930 | 22861810 ~ 23022395 (+) | False | LOC113533992 |
| trnah-gug_12 | other | downstream | 392707 | 24426769 ~ 24426840 (+) | True | trnah-gug_12 |
| trnar-acg_2 | other | downstream | 392893 | 24426955 ~ 24427027 (+) | True | trnar-acg_2 |
| trnae-uuc_2 | other | downstream | 394118 | 24428180 ~ 24428251 (+) | True | trnae-uuc_2 |
| trnah-gug_13 | other | downstream | 395342 | 24429404 ~ 24429475 (+) | True | trnah-gug_13 |
| trnar-acg_3 | other | downstream | 395528 | 24429590 ~ 24429662 (+) | True | trnar-acg_3 |
