Gene
RNA
| Item | Value |
|---|---|
| RNA id | XR_004578998.1 |
| length | 1092 |
| lncRNA type | inter_gene |
| GC content | 0.45 |
| exon number | 6 |
| gene id | LOC117598329 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_047604.1 |
| NCBI id | CM018550.1 |
| chromosome length | 29376037 |
| location | 26803056 ~ 26839478 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| id | name | namespace |
|---|---|---|
| GO:0010452 | histone H3-K36 methylation | biological_process |
| GO:0045893 | positive regulation of transcription, DNA-templated | biological_process |
| GO:0018023 | peptidyl-lysine trimethylation | biological_process |
| GO:0018026 | peptidyl-lysine monomethylation | biological_process |
| GO:0018027 | peptidyl-lysine dimethylation | biological_process |
| GO:0005634 | nucleus | cellular_component |
| GO:0003713 | transcription coactivator activity | molecular_function |
| GO:0046975 | histone methyltransferase activity (H3-K36 specific) | molecular_function |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU203645 | lncRNA | upstream | 13249 | 26789523 ~ 26789807 (+) | True | G172052 |
| XR_004579001.1 | lncRNA | upstream | 116330 | 26625940 ~ 26686726 (+) | True | LOC117598331 |
| TU203215 | lncRNA | upstream | 1024324 | 25682394 ~ 25778732 (+) | True | G171684 |
| TU203168 | lncRNA | upstream | 1210307 | 25587489 ~ 25592749 (+) | True | G171647 |
| TU203132 | lncRNA | upstream | 1280367 | 25518116 ~ 25522689 (+) | True | G171619 |
| TU203694 | lncRNA | downstream | 27639 | 26867117 ~ 26960238 (+) | True | G172099 |
| TU203720 | lncRNA | downstream | 127854 | 26967332 ~ 26967536 (+) | True | G172118 |
| TU203716 | lncRNA | downstream | 128132 | 26967610 ~ 26968416 (+) | True | G172114 |
| TU203692 | lncRNA | downstream | 134218 | 26973696 ~ 26973942 (+) | True | G172097 |
| TU203994 | lncRNA | downstream | 493926 | 27333404 ~ 27333880 (+) | True | G172352 |
| XM_034307767.1 | mRNA | upstream | 383849 | 26407679 ~ 26419207 (+) | True | vrk1 |
| XM_026926048.2 | mRNA | upstream | 384001 | 26405390 ~ 26419055 (+) | False | vrk1 |
| XM_026926082.2 | mRNA | upstream | 445913 | 26349862 ~ 26357143 (+) | True | ak7b |
| XM_026926532.2 | mRNA | downstream | 64161 | 26903639 ~ 26914229 (+) | True | hhipl1 |
| XM_026926627.2 | mRNA | downstream | 164631 | 27004109 ~ 27006749 (+) | True | slirp |
| XM_026926030.2 | mRNA | downstream | 168456 | 27007934 ~ 27125905 (+) | True | adck1 |
| XM_034307774.1 | mRNA | downstream | 168456 | 27007934 ~ 27125905 (+) | False | adck1 |
| XM_026926031.2 | mRNA | downstream | 168456 | 27007934 ~ 27125905 (+) | False | adck1 |
| TU202966 | other | upstream | 1484795 | 25315560 ~ 25318261 (+) | False | samd4a |
| TU202922 | other | upstream | 1626224 | 25176376 ~ 25176832 (+) | False | LOC117598238 |
| TU202767 | other | upstream | 1795290 | 25003983 ~ 25007766 (+) | True | G171329 |
| TU202761 | other | upstream | 1803007 | 24994493 ~ 25000049 (+) | False | cx28.6 |
| trnar-acg_3 | other | upstream | 2373394 | 24429590 ~ 24429662 (+) | True | trnar-acg_3 |
| trnat-ugu_12 | other | downstream | 75880 | 26915358 ~ 26915430 (+) | True | trnat-ugu_12 |
| XR_003403449.2 | other | downstream | 316865 | 27156343 ~ 27465649 (+) | False | nrxn3a |
| XR_003403450.2 | other | downstream | 316865 | 27156343 ~ 27465649 (+) | False | nrxn3a |
| XR_003403451.2 | other | downstream | 316865 | 27156343 ~ 27465649 (+) | False | nrxn3a |
| trnak-uuu_7 | other | downstream | 885729 | 27725207 ~ 27725279 (+) | True | trnak-uuu_7 |
