RNA id: XR_004579004.1


Basic Information

Item Value
RNA id XR_004579004.1
length 186
RNA type ncRNA
GC content 0.27
exon number 2
gene id LOC117598336
representative True

Chromosome Information

Item Value
chromosome id NC_047604.1
NCBI id CM018550.1
chromosome length 29376037
location 17925706 ~ 17926020 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TGTTTGAAGAATttaaaaagcttaatattttcaGATTTGATCAGAATTTCAATATAAAGCTACAACAGTCCAGTTGGATTATTCATTAGCATTAAATGCAAATATATCTGATGCATGAAAATCCATATTTAGTCTACTACATatagaaaaggagaagaagaagaaaaaaaaagtacgcCACTTTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004579019.1 lncRNA upstream 491485 17412038 ~ 17434221 (+) True LOC113539009
XR_003403893.2 lncRNA upstream 491485 17426094 ~ 17434221 (+) False LOC113539009
TU197864 lncRNA upstream 494965 17385507 ~ 17430741 (+) False sox11a
TU197866 lncRNA upstream 494965 17385507 ~ 17430741 (+) False sox11a
TU197861 lncRNA upstream 563466 17362026 ~ 17362240 (+) True G167123
XR_003403868.2 lncRNA downstream 146155 18072175 ~ 18087997 (+) True LOC113538631
TU198182 lncRNA downstream 163584 18089604 ~ 18089814 (+) True G167395
TU198218 lncRNA downstream 200415 18126435 ~ 18127367 (+) True G167428
TU198351 lncRNA downstream 360182 18286202 ~ 18288307 (+) True G167546
TU198362 lncRNA downstream 449962 18375982 ~ 18376347 (+) True G167557
XM_026933794.2 mRNA upstream 2955 17867416 ~ 17922751 (+) False kidins220a
XM_026933797.2 mRNA upstream 2955 17871647 ~ 17922751 (+) False kidins220a
XM_026933798.2 mRNA upstream 2955 17876601 ~ 17922751 (+) False kidins220a
XM_026933799.2 mRNA upstream 2955 17876601 ~ 17922751 (+) False kidins220a
XM_026933800.2 mRNA upstream 2955 17876601 ~ 17922751 (+) False kidins220a
XM_026933959.2 mRNA downstream 206404 18132424 ~ 18187362 (+) True nhsl1a
XM_026933960.2 mRNA downstream 223652 18149672 ~ 18187362 (+) False nhsl1a
XM_026933962.2 mRNA downstream 225904 18151924 ~ 18187362 (+) False nhsl1a
XM_026933961.2 mRNA downstream 244607 18170627 ~ 18187362 (+) False nhsl1a
XM_034308141.1 mRNA downstream 247110 18173130 ~ 18187362 (+) False nhsl1a
XR_004578941.1 other upstream 10719 17876601 ~ 17914987 (+) True kidins220a
TU197931 other upstream 218874 17700500 ~ 17706832 (+) False itgb1bp1
TU197685 other upstream 868895 17055674 ~ 17056811 (+) True G166976
XR_004578942.1 other upstream 962094 16953173 ~ 16963612 (+) False asxl2
TU196968 other upstream 1932830 15990829 ~ 15992876 (+) True G166338
XR_003403895.1 other downstream 393950 18319970 ~ 18320076 (+) True LOC113539017
XR_004578955.1 other downstream 404448 18330468 ~ 18371971 (+) False ldah
TU199111 other downstream 1748893 19674913 ~ 19687591 (+) True G168191
TU199113 other downstream 1753295 19679315 ~ 19687591 (+) False G168191
XR_004578946.1 other downstream 1953715 19879735 ~ 19886509 (+) True zfyve19

Expression Profile