RNA id: trnah-gug_11


Basic Information

Item Value
RNA id trnah-gug_11
length 72
RNA type tRNA
GC content 0.61
exon number 1
gene id trnah-gug_11
representative True

Chromosome Information

Item Value
chromosome id NC_047604.1
NCBI id CM018550.1
chromosome length 29376037
location 23964848 ~ 23964919 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GCCGTGATCGTATAGTGGTCAGTACTCTGCGTTGTGGCCGCAGCAACCCCGGTTCGAATCCGGGTCACGGCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU202008 lncRNA upstream 135662 23827063 ~ 23829186 (+) True G170718
TU202006 lncRNA upstream 182759 23779323 ~ 23782089 (+) True G170716
TU202007 lncRNA upstream 185621 23778269 ~ 23779227 (+) True G170717
TU201871 lncRNA upstream 589410 23375238 ~ 23375438 (+) True G170610
TU201829 lncRNA upstream 814764 23149542 ~ 23150084 (+) True G170568
TU202239 lncRNA downstream 45430 24010349 ~ 24011349 (+) True G170893
XR_004578986.1 lncRNA downstream 63406 24028325 ~ 24034062 (+) True LOC117598313
TU202251 lncRNA downstream 70865 24035784 ~ 24036171 (+) True G170904
TU202374 lncRNA downstream 342935 24307854 ~ 24308329 (+) True G171017
TU202376 lncRNA downstream 344711 24309630 ~ 24309966 (+) True G171019
XM_026926068.2 mRNA upstream 55213 23894848 ~ 23909635 (+) True wdr25
XM_026926864.2 mRNA upstream 81126 23879309 ~ 23883722 (+) True slc25a47b
XM_034308066.1 mRNA upstream 100715 23820846 ~ 23864133 (+) True fancm
XM_034308067.1 mRNA upstream 100715 23820846 ~ 23864133 (+) False fancm
XM_026926805.2 mRNA upstream 144534 23797542 ~ 23820314 (+) True LOC113534170
XM_026926208.2 mRNA downstream 14471 23979390 ~ 23982635 (+) True LOC113533835
XM_026926430.2 mRNA downstream 23839 23988758 ~ 23998042 (+) True ctsba
XM_026926612.2 mRNA downstream 268439 24233358 ~ 24235125 (+) True pomca
XM_026925957.2 mRNA downstream 273738 24238657 ~ 24246890 (+) False dnajc27
XM_026925956.2 mRNA downstream 273751 24238670 ~ 24246890 (+) True dnajc27
trnah-gug_10 other upstream 2793 23961984 ~ 23962055 (+) True trnah-gug_10
XR_004578924.1 other upstream 942453 22861807 ~ 23022395 (+) False LOC113533992
XR_004578925.1 other upstream 942453 22861810 ~ 23022395 (+) False LOC113533992
TU201530 other upstream 1074078 22862027 ~ 22890770 (+) True LOC113533992
TU200872 other upstream 2144789 21819281 ~ 21820059 (+) True G169692
trnay-aua other downstream 115 23965034 ~ 23965106 (+) True trnay-aua
trnah-gug_12 other downstream 461850 24426769 ~ 24426840 (+) True trnah-gug_12
trnar-acg_2 other downstream 462036 24426955 ~ 24427027 (+) True trnar-acg_2
trnae-uuc_2 other downstream 463261 24428180 ~ 24428251 (+) True trnae-uuc_2
trnah-gug_13 other downstream 464485 24429404 ~ 24429475 (+) True trnah-gug_13