RNA id: TU255010


Basic Information

Item Value
RNA id TU255010
length 832
RNA type TUCP
GC content 0.42
exon number 2
gene id LOC113546926
representative True

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 22312787 ~ 22313871 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ccGCTGTACTCggtaataaaatgattaaatctcATCCATCCACGCATAAAACGATTCctattacatttataacacactcaacaataatatttttgcgTGTTAAGTACTTAATAAAACTTCTGGCAACTTTTACAAACTTATATTGAAGGAGCACCGCTAACTGCTTACCTCTCCTCAGCGTGCTCAACGCGGCTGAACAGAAATGACGTCAGGAcgtaaaatgaatataaaactcTTTTCCCAGaatgacacaaataaaatacaaaactaaaTTATAACGTTTTCATGCACAAACTAATATAAAGTAAATAGATGAAAATTGAAAGGAAGGATCATTAGTGAAATACATTAATTTAGATCGTGAGTACACACTCTTATTAACATCCGTCACACATGCAAATCTCCCCAACCTcagacagatataaatacaCTGCAAGTACACAGCAGTCTCTGTGTTTGGTCGAGTACAGCAGAGGAATCATGAGCTggcctcttcttcttctgatatCCTCTGTGTCCTATGTTCATGGCATCAGTCTGACCTCGTCTCCTGCTGAGGTTAAACCTCCTGGAGCCTCAGTGAAGTTGTCCTGTCAGATTTCTGGCTATGCCCTCACTAGCCACGGCACAGGCTGGATCAGGCAGCCTCCAGGAAAAGGCTTGGAGTGGATCGGGATCATATGGGGTGGTGGAAGCATAGACTATGGAGCTTCCTTTAAAACTCgcttcagcatctccagagacacgAGCAACAATGTGCTTTACTTAGATATCAGCAGCCTGGTGCCAGAAGACACGGCTGTTTATTATTGTGCAAAGACAGGCACAGCTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU254808 lncRNA downstream 29591 22254426 ~ 22283330 (-) False G215182
TU254830 lncRNA downstream 29591 22260997 ~ 22283330 (-) False G215182
TU254864 lncRNA downstream 71959 22236967 ~ 22240962 (-) False G215182
TU254889 lncRNA downstream 75410 22236967 ~ 22237511 (-) False G215182
TU254995 lncRNA downstream 115509 22164570 ~ 22197412 (-) True G215228
TU255019 lncRNA upstream 25171 22339042 ~ 22344517 (-) False LOC117598814
TU255027 lncRNA upstream 76485 22390356 ~ 22397751 (-) True G215249
TU255043 lncRNA upstream 132251 22446122 ~ 22543980 (-) True G215262
TU255051 lncRNA upstream 161150 22475021 ~ 22507863 (-) True G215269
XR_004579407.1 lncRNA upstream 164105 22477976 ~ 22480922 (-) True LOC117598972
XM_026936343.2 mRNA downstream 699046 21586098 ~ 21613875 (-) False b4galt1l
XM_026936342.2 mRNA downstream 699046 21586098 ~ 21613875 (-) True b4galt1l
XM_034309841.1 mRNA downstream 932705 21368754 ~ 21380216 (-) True srp72
XM_026916545.2 mRNA downstream 945809 21360562 ~ 21367112 (-) True arl9
XM_034309813.1 mRNA upstream 12855 22326726 ~ 22345779 (-) True LOC117598814
XM_034310140.1 mRNA upstream 85814 22399685 ~ 22419910 (-) False LOC117598969
XM_034309681.1 mRNA upstream 238853 22552724 ~ 22582102 (-) True topaz1
XM_026947027.2 mRNA upstream 239758 22553629 ~ 22582102 (-) False topaz1
XM_026947028.2 mRNA upstream 239759 22553630 ~ 22582102 (-) False topaz1
TU254819 other downstream 27218 22262123 ~ 22285703 (-) True G215182
TU254852 other downstream 29591 22254426 ~ 22283330 (-) False G215182
TU254855 other downstream 35386 22277067 ~ 22277535 (-) False G215182
LOC117598921 other downstream 35452 22277026 ~ 22277469 (-) True LOC117598921
LOC117598813 other downstream 37026 22275061 ~ 22275895 (-) True LOC117598813
LOC117598862 other upstream 5673 22319544 ~ 22320275 (-) True LOC117598862
XR_004579410.1 other upstream 7303 22321174 ~ 22321733 (-) True LOC117598975
TU255018 other upstream 25171 22339042 ~ 22364265 (-) False LOC117598814
XR_004579404.1 other upstream 95363 22409234 ~ 22419910 (-) False LOC117598969
XR_004579403.1 other upstream 99796 22413667 ~ 22419910 (-) True LOC117598969

Expression Profile