RNA id: LOC117598775


Basic Information

Item Value
RNA id LOC117598775
length 342
RNA type V_segment
GC content 0.47
exon number 3
gene id LOC117598775
representative True

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 21668341 ~ 21668882 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

atgttctctacatctctactgctcctgctggcagctgcttcctatgtgcatggtgtggaactgactcagcctgcttccatgacagtccagccaggccagagtctctccatcccctgcaaGGTCTCATATTCAGTTACGAGTGATGGTACAGGTTGgatccgacaacctgcaggaaaagctctggagtggattggaGCTATCTATTACAATGGGGTTACAGcttacagtgacaaactgaaaaacaagttcagcatctccagagacactgctactaacacaataacaattcgaggacagaatctgcaaactgaagacacagctgtgtattactgcgcaaaaTAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU254607 lncRNA upstream 11506 21656261 ~ 21656835 (+) True G215042
TU254346 lncRNA upstream 33267 21634851 ~ 21635074 (+) True G214829
TU254342 lncRNA upstream 51047 21617095 ~ 21617294 (+) True G214825
TU254247 lncRNA upstream 102965 21557990 ~ 21565376 (+) True LOC113540569
TU254249 lncRNA upstream 111940 21551549 ~ 21556401 (+) True G214747
TU254625 lncRNA downstream 48810 21717692 ~ 21718076 (+) True G215055
TU254629 lncRNA downstream 55729 21724611 ~ 22137078 (+) True G215059
TU254636 lncRNA downstream 105341 21774223 ~ 21807343 (+) True G215064
XR_004579408.1 lncRNA downstream 219149 21888031 ~ 21888800 (+) True LOC117598973
XR_004579405.1 lncRNA downstream 243730 21912612 ~ 21913349 (+) True LOC117598970
XM_034309812.1 mRNA upstream 36435 21620631 ~ 21631906 (+) True rest
XM_034309844.1 mRNA upstream 104540 21514573 ~ 21563801 (+) False LOC113540569
XM_034309814.1 mRNA downstream 794272 22463154 ~ 22490911 (+) True LOC113546930
XM_034309815.1 mRNA downstream 868620 22537502 ~ 22548866 (+) True LOC113546929
XM_026947097.2 mRNA downstream 945977 22614859 ~ 22621980 (+) True cckb
XM_034310060.1 mRNA downstream 1064853 22733735 ~ 22754432 (+) False rnf44
XM_034310059.1 mRNA downstream 1072058 22740940 ~ 22754432 (+) True rnf44
LOC117598774 other upstream 2597 21664594 ~ 21665744 (+) True LOC117598774
LOC117598848 other upstream 4801 21663095 ~ 21663540 (+) True LOC117598848
LOC117599000 other upstream 7302 21660425 ~ 21661039 (+) True LOC117599000
LOC117598992 other upstream 9234 21658502 ~ 21659107 (+) True LOC117598992
TU254580 other upstream 19189 21646080 ~ 21649152 (+) True G215015
TU254573 other downstream 42312 21711194 ~ 21721059 (+) True G215008
LOC117598918 other downstream 42433 21711315 ~ 21711778 (+) True LOC117598918
LOC117598875 other downstream 45047 21713929 ~ 21714624 (+) True LOC117598875
LOC117598966 other downstream 51751 21720633 ~ 21721061 (+) True LOC117598966
LOC117598855 other downstream 57580 21726462 ~ 21727321 (+) True LOC117598855

Expression Profile