RNA id: LOC117598791


Basic Information

Item Value
RNA id LOC117598791
length 410
RNA type V_segment
GC content 0.47
exon number 3
gene id LOC117598791
representative True

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 21919924 ~ 21977381 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

cagtacaaacaacacacaccatgttctctacatctctactgctcctgctggcagctgcttcctatgtgcatggtgaggaactgactcagcctgcttccatgacagtccagccaggccagagtctctccatcccctgcaaGGTCTCATATTCAGTGACGAGTTATAGTACAGGTTGgatccgacaacctgcaggaaaagctctggagtggattggaCTCATCAGTTACAGTGGGAGTACAGCTTatagtgacaaactgaaaaacaagttcagcatctccagagacacggctattaacacaataacaattcgaggacagaatctgcagactgaagacacagctgtgtattactgcTGCAACAAATTCTTCCAGTCTTCTCCACTTTTCCACTTCTATCCAGTCAGGAAGTGA

Function

GO: NA

KEGG:

id description
ko05152 Tuberculosis

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004579405.1 lncRNA upstream 6591 21912612 ~ 21913349 (+) True LOC117598970
XR_004579408.1 lncRNA upstream 31140 21888031 ~ 21888800 (+) True LOC117598973
TU254636 lncRNA upstream 112597 21774223 ~ 21807343 (+) True G215064
TU254625 lncRNA upstream 201864 21717692 ~ 21718076 (+) True G215055
TU254607 lncRNA upstream 263105 21656261 ~ 21656835 (+) True G215042
TU254658 lncRNA downstream 1237 21923978 ~ 21935017 (+) False G215075
TU254659 lncRNA downstream 1237 21923978 ~ 21966233 (+) True G215075
TU254600 lncRNA downstream 93077 22015818 ~ 22020735 (+) True G215035
TU254686 lncRNA downstream 135603 22058344 ~ 22059756 (+) True G215093
TU254689 lncRNA downstream 154749 22077490 ~ 22133009 (+) True G215095
XM_034309812.1 mRNA upstream 288034 21620631 ~ 21631906 (+) True rest
XM_034309844.1 mRNA upstream 356139 21514573 ~ 21563801 (+) False LOC113540569
XM_034309814.1 mRNA downstream 540413 22463154 ~ 22490911 (+) True LOC113546930
XM_034309815.1 mRNA downstream 614761 22537502 ~ 22548866 (+) True LOC113546929
XM_026947097.2 mRNA downstream 692118 22614859 ~ 22621980 (+) True cckb
XM_034310060.1 mRNA downstream 810994 22733735 ~ 22754432 (+) False rnf44
XM_034310059.1 mRNA downstream 818199 22740940 ~ 22754432 (+) True rnf44
TU254648 other upstream 6622 21912590 ~ 21913318 (+) True G215072
LOC117598790 other upstream 8121 21911288 ~ 21911819 (+) True LOC117598790
LOC117598935 other upstream 9844 21909653 ~ 21910096 (+) True LOC117598935
LOC117598962 other upstream 20601 21898908 ~ 21899339 (+) True LOC117598962
LOC117598900 other upstream 25779 21893169 ~ 21894161 (+) True LOC117598900
LOC117598968 other downstream 54219 21976960 ~ 21979634 (+) True LOC117598968
LOC117598891 other downstream 58212 21980953 ~ 21981799 (+) False LOC117598891
TU254667 other downstream 58213 21980954 ~ 21981815 (+) True LOC117598891
LOC117598876 other downstream 64208 21986949 ~ 21987425 (+) True LOC117598876
LOC117598905 other downstream 65842 21988583 ~ 21989238 (+) True LOC117598905

Expression Profile