RNA id: LOC117598796


Basic Information

Item Value
RNA id LOC117598796
length 416
RNA type V_segment
GC content 0.46
exon number 2
gene id LOC117598796
representative True

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 22003426 ~ 22003947 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CTGTGGGCTCTGGAGAATTTAGCACTGCTTTTAGTTAAACGATGTTCCTTCCATTTTTGCTGCTGCTGGCAGCTTCATCCTatgtggAATGTGCAGTAGAACTCACTCAGGTCACCTCAGTGATGTTAAAGCCAGGAGACTCTTTAACCCTCAGCTGTAAAGTATCCGGCTACTCTGTAACTGATAACAGCTACGCCACAGCTTGGATTCGACAACCTGCAGGGAAAACTCTGGAGTGGATAAACAACATTTGGGGTGGTGgaagtatttataataaagagTCTCTAAAAAGCAAGTTCAGTATTTCTAAAGACGGCTCCAGCAGCACGGTGACTCTGAGAGGACAGAATCTGCAGacagaagacacagctgtgtattactgcgcccgccacacacacactggtgctTCTACTTAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU254643 lncRNA upstream 8361 21916419 ~ 21995065 (+) True G215069
TU254659 lncRNA upstream 37193 21923978 ~ 21966233 (+) True G215075
TU254658 lncRNA upstream 68409 21923978 ~ 21935017 (+) False G215075
XR_004579405.1 lncRNA upstream 90077 21912612 ~ 21913349 (+) True LOC117598970
XR_004579408.1 lncRNA upstream 114626 21888031 ~ 21888800 (+) True LOC117598973
TU254600 lncRNA downstream 11871 22015818 ~ 22020735 (+) True G215035
TU254686 lncRNA downstream 54397 22058344 ~ 22059756 (+) True G215093
TU254689 lncRNA downstream 73543 22077490 ~ 22133009 (+) True G215095
TU254702 lncRNA downstream 129255 22133202 ~ 22401320 (+) True G215107
XR_004579409.1 lncRNA downstream 133348 22137295 ~ 22139333 (+) True LOC117598974
XM_034309812.1 mRNA upstream 371520 21620631 ~ 21631906 (+) True rest
XM_034309844.1 mRNA upstream 439625 21514573 ~ 21563801 (+) False LOC113540569
XM_034309814.1 mRNA downstream 459207 22463154 ~ 22490911 (+) True LOC113546930
XM_034309815.1 mRNA downstream 533555 22537502 ~ 22548866 (+) True LOC113546929
XM_026947097.2 mRNA downstream 610912 22614859 ~ 22621980 (+) True cckb
XM_034310060.1 mRNA downstream 729788 22733735 ~ 22754432 (+) False rnf44
XM_034310059.1 mRNA downstream 736993 22740940 ~ 22754432 (+) True rnf44
TU254587 other upstream 2617 21663084 ~ 22000809 (+) True G215022
LOC117598881 other upstream 2636 22000286 ~ 22000790 (+) True LOC117598881
LOC117598899 other upstream 5888 21996056 ~ 21997538 (+) True LOC117598899
LOC117598866 other upstream 8339 21994519 ~ 21995087 (+) True LOC117598866
LOC117598861 other upstream 10285 21992460 ~ 21993141 (+) True LOC117598861
LOC117598797 other downstream 1005 22004952 ~ 22005583 (+) True LOC117598797
TU254675 other downstream 1119 22005066 ~ 22063878 (+) True G215085
LOC117598887 other downstream 4543 22008490 ~ 22009299 (+) True LOC117598887
LOC117598878 other downstream 10156 22014103 ~ 22014607 (+) True LOC117598878
LOC117598938 other downstream 11776 22015723 ~ 22016166 (+) True LOC117598938

Expression Profile