RNA id: TU254599


Basic Information

Item Value
RNA id TU254599
length 343
RNA type TUCP
GC content 0.48
exon number 2
gene id LOC117598853
representative False

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 21837463 ~ 21853760 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

caacacacaccatgatctctacatccctactgctgctgctgctggcagccgtacactgtgttcactgtgttgagctgatccagaccggatccacagtattaacccctggtcagtcaatgactctgacctgtaAAGTATCTGGATATTCATTAACTGATAGCAGCTACTGTACAAACTGGATCCTACAAACTGCAGGAAAAACTCTGGAGTGGATCGGACGTATATGTGGTAGCGGTGGCACTGACtacagtgagaaactgaaaagcaggtttcagatttccagagacacgtccagcagcacagtaacattaacagggcagaagatgcagactgaagacacagc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU254636 lncRNA upstream 30120 21774223 ~ 21807343 (+) True G215064
TU254625 lncRNA upstream 119387 21717692 ~ 21718076 (+) True G215055
TU254607 lncRNA upstream 180628 21656261 ~ 21656835 (+) True G215042
TU254346 lncRNA upstream 202389 21634851 ~ 21635074 (+) True G214829
TU254342 lncRNA upstream 220169 21617095 ~ 21617294 (+) True G214825
XR_004579408.1 lncRNA downstream 34271 21888031 ~ 21888800 (+) True LOC117598973
XR_004579405.1 lncRNA downstream 58852 21912612 ~ 21913349 (+) True LOC117598970
TU254643 lncRNA downstream 62659 21916419 ~ 21995065 (+) True G215069
TU254658 lncRNA downstream 70218 21923978 ~ 21935017 (+) False G215075
TU254659 lncRNA downstream 70218 21923978 ~ 21966233 (+) True G215075
XM_034309812.1 mRNA upstream 205557 21620631 ~ 21631906 (+) True rest
XM_034309844.1 mRNA upstream 273662 21514573 ~ 21563801 (+) False LOC113540569
XM_034309814.1 mRNA downstream 609394 22463154 ~ 22490911 (+) True LOC113546930
XM_034309815.1 mRNA downstream 683742 22537502 ~ 22548866 (+) True LOC113546929
XM_026947097.2 mRNA downstream 761099 22614859 ~ 22621980 (+) True cckb
XM_034310060.1 mRNA downstream 879975 22733735 ~ 22754432 (+) False rnf44
XM_034310059.1 mRNA downstream 887180 22740940 ~ 22754432 (+) True rnf44
LOC117598953 other upstream 5245 21831765 ~ 21832218 (+) False LOC117598953
LOC117598860 other upstream 7324 21829547 ~ 21830139 (+) True LOC117598860
LOC117598939 other upstream 13351 21823669 ~ 21824112 (+) True LOC117598939
LOC117598777 other upstream 106394 21730403 ~ 21731069 (+) True LOC117598777
LOC117598855 other upstream 110142 21726462 ~ 21727321 (+) True LOC117598855
LOC117598928 other downstream 1969 21855729 ~ 21856436 (+) True LOC117598928
LOC117598957 other downstream 10227 21863987 ~ 21864616 (+) True LOC117598957
LOC117598937 other downstream 18242 21872002 ~ 21872445 (+) True LOC117598937
TU254578 other downstream 20379 21874139 ~ 21884513 (+) True G215013
LOC117598892 other downstream 20393 21874153 ~ 21874615 (+) True LOC117598892

Expression Profile