RNA id: LOC117598884


Basic Information

Item Value
RNA id LOC117598884
length 367
RNA type V_segment
GC content 0.48
exon number 2
gene id LOC117598884
representative True

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 22222397 ~ 22222851 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

caccatgatctctacatccctactgctgctgctgctggcagccgtacactgtgttcactgtgttgagctgatccagaccggatccacagtattaacccctggtcagtcaatgactctgacctgtaAAGTATCTGGATATTCATTAACTGATAGCAGCTACTGTACACACTGGatacgacaacctgcaggaaaagctctggagtgggtCGGACGTATATGTGGTGGCGGTAGCATTAACTAcaatgagaaactgaaaagcaggtttcagatttccagagacacgtccagcagcacagtaacattaacagggcagaagatgcagactgaagacacagctgtgtattactgcgctcgtgaaccacagtga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU254995 lncRNA downstream 24985 22164570 ~ 22197412 (-) True G215228
TU254781 lncRNA downstream 82257 22125672 ~ 22140140 (-) True G215172
TU254985 lncRNA downstream 86390 22080162 ~ 22136007 (-) True G215221
TU254991 lncRNA downstream 89032 22121456 ~ 22133365 (-) True G215224
TU254780 lncRNA downstream 139554 22025483 ~ 22082843 (-) True G215171
TU254864 lncRNA upstream 14116 22236967 ~ 22240962 (-) False G215182
TU254889 lncRNA upstream 14116 22236967 ~ 22237511 (-) False G215182
TU254808 lncRNA upstream 31575 22254426 ~ 22283330 (-) False G215182
TU254830 lncRNA upstream 38146 22260997 ~ 22283330 (-) False G215182
TU255019 lncRNA upstream 116191 22339042 ~ 22344517 (-) False LOC117598814
XM_026936343.2 mRNA downstream 608522 21586098 ~ 21613875 (-) False b4galt1l
XM_026936342.2 mRNA downstream 608522 21586098 ~ 21613875 (-) True b4galt1l
XM_034309841.1 mRNA downstream 842181 21368754 ~ 21380216 (-) True srp72
XM_026916545.2 mRNA downstream 855285 21360562 ~ 21367112 (-) True arl9
XM_034309813.1 mRNA upstream 103875 22326726 ~ 22345779 (-) True LOC117598814
XM_034310140.1 mRNA upstream 176834 22399685 ~ 22419910 (-) False LOC117598969
XM_034309681.1 mRNA upstream 329873 22552724 ~ 22582102 (-) True topaz1
XM_026947027.2 mRNA upstream 330778 22553629 ~ 22582102 (-) False topaz1
XM_026947028.2 mRNA upstream 330779 22553630 ~ 22582102 (-) False topaz1
LOC117598811 other downstream 3333 22217308 ~ 22219064 (-) True LOC117598811
TU254974 other downstream 5327 21957320 ~ 22217070 (-) False G215211
TU254973 other downstream 5327 22216506 ~ 22217070 (-) True G215211
LOC113546935 other downstream 5363 22215742 ~ 22217034 (-) True LOC113546935
LOC117598898 other downstream 7053 22214544 ~ 22215344 (-) True LOC117598898
TU254899 other upstream 2790 22225641 ~ 22257250 (-) True G215184
LOC117598812 other upstream 4590 22227441 ~ 22227947 (-) True LOC117598812
TU254998 other upstream 4597 22227448 ~ 22227943 (-) False LOC117598812
LOC117598926 other upstream 7307 22230158 ~ 22230602 (-) True LOC117598926
TU254814 other upstream 7315 22230166 ~ 22247325 (-) False G215182

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) TU463378 False 515 lncRNA 0.41 2 CI01000288 69553 ~ 70180 (+)
mexican tetra (Astyanax mexicanus) TU463378 False 1094 lncRNA 0.35 2 NW_019172929.1 1140518 ~ 1141652 (+)