RNA id: LOC117598905


Basic Information

Item Value
RNA id LOC117598905
length 567
RNA type V_segment
GC content 0.44
exon number 2
gene id LOC117598905
representative True

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 21988583 ~ 21989238 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TGCATCAGATTTCCTCTAAGATAAGGagtgtgtctatgcaaatgtccttccctgttatatatttaagcaatgaagaccaagagcttttacttcttctgcttcaacacacaccatgatctctacatccctactgctgctgctgctggcagccgtacactgtgttcactgtgttgagctgatccagaccggatccacagtattaacccctggtcagtcaatgactctgacctgtaAAGTGTCTGGATATTCAGTAACGAGTACCTACTGTACAGACTGGatacgacaacctgcaggaaaaactCTGGAGTGGGTCGGAGAGATATGTCATGATGGTAGGACTTACTACAGTGAGAAGctgaaaagcaggtttcaggtttccagagacacgtccagcagcacagtaacattaacagggcAGAACATGCAGagtgaagacacagctgtgtattactgcgctcgtggagcacagtgagacagatcaacaacatccctgtacaaaaacacccagtacAGAAAACAAATTTACATCAGCAAAAGCAGAAATacaatgttttatcattttgatGT

Function

GO: NA

KEGG:

id description
K06856 IGH; immunoglobulin heavy chain

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU254659 lncRNA upstream 22350 21923978 ~ 21966233 (+) True G215075
TU254658 lncRNA upstream 53566 21923978 ~ 21935017 (+) False G215075
XR_004579405.1 lncRNA upstream 75234 21912612 ~ 21913349 (+) True LOC117598970
XR_004579408.1 lncRNA upstream 99783 21888031 ~ 21888800 (+) True LOC117598973
TU254636 lncRNA upstream 181240 21774223 ~ 21807343 (+) True G215064
TU254600 lncRNA downstream 26580 22015818 ~ 22020735 (+) True G215035
TU254686 lncRNA downstream 69106 22058344 ~ 22059756 (+) True G215093
TU254689 lncRNA downstream 88252 22077490 ~ 22133009 (+) True G215095
TU254702 lncRNA downstream 143964 22133202 ~ 22401320 (+) True G215107
XR_004579409.1 lncRNA downstream 148057 22137295 ~ 22139333 (+) True LOC117598974
XM_034309812.1 mRNA upstream 356677 21620631 ~ 21631906 (+) True rest
XM_034309844.1 mRNA upstream 424782 21514573 ~ 21563801 (+) False LOC113540569
XM_034309814.1 mRNA downstream 473916 22463154 ~ 22490911 (+) True LOC113546930
XM_034309815.1 mRNA downstream 548264 22537502 ~ 22548866 (+) True LOC113546929
XM_026947097.2 mRNA downstream 625621 22614859 ~ 22621980 (+) True cckb
XM_034310060.1 mRNA downstream 744497 22733735 ~ 22754432 (+) False rnf44
XM_034310059.1 mRNA downstream 751702 22740940 ~ 22754432 (+) True rnf44
LOC117598876 other upstream 1158 21986949 ~ 21987425 (+) True LOC117598876
TU254667 other upstream 6768 21980954 ~ 21981815 (+) True LOC117598891
LOC117598891 other upstream 6784 21980953 ~ 21981799 (+) False LOC117598891
LOC117598968 other upstream 8949 21976960 ~ 21979634 (+) True LOC117598968
TU254596 other upstream 11202 21919924 ~ 21977381 (+) False LOC117598791
LOC117598861 other downstream 3222 21992460 ~ 21993141 (+) True LOC117598861
LOC117598866 other downstream 5281 21994519 ~ 21995087 (+) True LOC117598866
TU254652 other downstream 5347 21994585 ~ 22029295 (+) True G215073
LOC117598899 other downstream 6818 21996056 ~ 21997538 (+) True LOC117598899
LOC117598881 other downstream 11048 22000286 ~ 22000790 (+) True LOC117598881

Expression Profile