RNA id: LOC117598915


Basic Information

Item Value
RNA id LOC117598915
length 457
RNA type V_segment
GC content 0.44
exon number 2
gene id LOC117598915
representative True

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 22103636 ~ 22104185 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

acacaccatgttctctacatctctactgctcctgctggcagctgcttcctatgtgcatggtgaggaactgactcagcctgcttccatgacagtccagccaggccagagtctctccatcccctgcaaGGTCTCATATTCAGTTACGAGCTATTATACAGGATGgatccgacaacctgcaggaaaagctctggagtggattggaTACATCAATAGCGATGGGAGTACAtattacagtgacaaactgaaaaacaagttcagcatctccagagacactgctactaacacaataacaattcgaggacagaatctgcaaactgaagacacagctgtgtattactgcgcaagagagtcacagtgacacagaatagtggattccccttacaaaaactttgagaCATGTTAGAGACATCCTCTCAATGCAACTAATAAACcatcttttactttttattcagTGGAA

Function

GO: NA

KEGG:

id description
ko05323 Rheumatoid arthritis
ko05320 Autoimmune thyroid disease
ko05330 Allograft rejection
ko05332 Graft-versus-host disease
ko05416 Viral myocarditis
ko04940 Type I diabetes mellitus

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU254686 lncRNA upstream 43880 22058344 ~ 22059756 (+) True G215093
TU254600 lncRNA upstream 82901 22015818 ~ 22020735 (+) True G215035
TU254643 lncRNA upstream 108571 21916419 ~ 21995065 (+) True G215069
TU254659 lncRNA upstream 137403 21923978 ~ 21966233 (+) True G215075
TU254658 lncRNA upstream 168619 21923978 ~ 21935017 (+) False G215075
TU254702 lncRNA downstream 29017 22133202 ~ 22401320 (+) True G215107
XR_004579409.1 lncRNA downstream 33110 22137295 ~ 22139333 (+) True LOC117598974
TU254726 lncRNA downstream 156706 22260891 ~ 22282993 (+) True G215127
TU254755 lncRNA downstream 236036 22340221 ~ 22343637 (+) True G215149
TU254759 lncRNA downstream 297765 22401950 ~ 22405524 (+) True G215153
XM_034309812.1 mRNA upstream 471730 21620631 ~ 21631906 (+) True rest
XM_034309844.1 mRNA upstream 539835 21514573 ~ 21563801 (+) False LOC113540569
XM_034309814.1 mRNA downstream 358969 22463154 ~ 22490911 (+) True LOC113546930
XM_034309815.1 mRNA downstream 433317 22537502 ~ 22548866 (+) True LOC113546929
XM_026947097.2 mRNA downstream 510674 22614859 ~ 22621980 (+) True cckb
XM_034310060.1 mRNA downstream 629550 22733735 ~ 22754432 (+) False rnf44
XM_034310059.1 mRNA downstream 636755 22740940 ~ 22754432 (+) True rnf44
LOC117598803 other upstream 11799 22091363 ~ 22091837 (+) True LOC117598803
LOC117598893 other upstream 13533 22089637 ~ 22090103 (+) True LOC117598893
LOC117598965 other upstream 16224 22086984 ~ 22087412 (+) False LOC117598965
TU254576 other upstream 16227 22075405 ~ 22087409 (+) True LOC117598965
LOC117598802 other upstream 18387 22082912 ~ 22085249 (+) True LOC117598802
LOC117598894 other downstream 1603 22105788 ~ 22106309 (+) True LOC117598894
LOC117598913 other downstream 3419 22107604 ~ 22108104 (+) True LOC117598913
LOC117598936 other downstream 6193 22110378 ~ 22110821 (+) True LOC117598936
TU254697 other downstream 7746 22111931 ~ 22112433 (+) False LOC117598804
LOC117598804 other downstream 7752 22111937 ~ 22112785 (+) True LOC117598804

Expression Profile