RNA id: LOC117598953


Basic Information

Item Value
RNA id LOC117598953
length 371
RNA type V_segment
GC content 0.47
exon number 2
gene id LOC117598953
representative False

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 21831765 ~ 21839896 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CTTCTCATTAGTCCTCCttcaacacaaacatgtttgcttcagctccactgctgctgctggctctCGCCCCCTatGTGTTCTGTGCTACTGAGCTCATCCAGCCAGACTCAGTGCTTATAAAGCCAGGAGAGACTTTAACCATCACCTGTAGAGTGTCTGGAGCTTCTATCACTGATAGCAGCCACTATGGAACAGCTTGGAttcgacaacctgcaggaaaagctctggagtggatcaatttaatttactataatGGGGAGATTCGTCAGAAAGATTCCCTTAAAAACAAGTTTGTCGTCTCTCGAGACACTTCCAGTAACACCGTGACCTTACGGGGACAGaacatgcagactgaagacacagctgtgtat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU254636 lncRNA upstream 24422 21774223 ~ 21807343 (+) True G215064
TU254625 lncRNA upstream 113689 21717692 ~ 21718076 (+) True G215055
TU254607 lncRNA upstream 174930 21656261 ~ 21656835 (+) True G215042
TU254346 lncRNA upstream 196691 21634851 ~ 21635074 (+) True G214829
TU254342 lncRNA upstream 214471 21617095 ~ 21617294 (+) True G214825
XR_004579408.1 lncRNA downstream 55813 21888031 ~ 21888800 (+) True LOC117598973
XR_004579405.1 lncRNA downstream 80394 21912612 ~ 21913349 (+) True LOC117598970
TU254643 lncRNA downstream 84201 21916419 ~ 21995065 (+) True G215069
TU254658 lncRNA downstream 91760 21923978 ~ 21935017 (+) False G215075
TU254659 lncRNA downstream 91760 21923978 ~ 21966233 (+) True G215075
XM_034309812.1 mRNA upstream 199859 21620631 ~ 21631906 (+) True rest
XM_034309844.1 mRNA upstream 267964 21514573 ~ 21563801 (+) False LOC113540569
XM_034309814.1 mRNA downstream 630936 22463154 ~ 22490911 (+) True LOC113546930
XM_034309815.1 mRNA downstream 705284 22537502 ~ 22548866 (+) True LOC113546929
XM_026947097.2 mRNA downstream 782641 22614859 ~ 22621980 (+) True cckb
XM_034310060.1 mRNA downstream 901517 22733735 ~ 22754432 (+) False rnf44
XM_034310059.1 mRNA downstream 908722 22740940 ~ 22754432 (+) True rnf44
LOC117598860 other upstream 1626 21829547 ~ 21830139 (+) True LOC117598860
LOC117598939 other upstream 7653 21823669 ~ 21824112 (+) True LOC117598939
LOC117598777 other upstream 100696 21730403 ~ 21731069 (+) True LOC117598777
LOC117598855 other upstream 104444 21726462 ~ 21727321 (+) True LOC117598855
LOC117598966 other upstream 110704 21720633 ~ 21721061 (+) True LOC117598966
TU254599 other downstream 5245 21837463 ~ 21853760 (+) False LOC117598853
LOC117598853 other downstream 5252 21837470 ~ 21838092 (+) True LOC117598853
LOC117598912 other downstream 12628 21844846 ~ 21845329 (+) True LOC117598912
LOC117598851 other downstream 15140 21847358 ~ 21848007 (+) True LOC117598851
TU254640 other downstream 15177 21847395 ~ 21847896 (+) False LOC117598851

Expression Profile