RNA id: TU254641


Basic Information

Item Value
RNA id TU254641
length 380
RNA type TUCP
GC content 0.46
exon number 3
gene id LOC117598953
representative True

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 21831765 ~ 21839896 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CATTAGTCCTCCttcaacacaaacatgtttgcttcagctccactgctgctgctggctctCGCCCCCTatGTGTTCTGTGCTACTGAGCTCATCCAGCCAGACTCAGTGCTTATAAAGCCAGGAGAGACTTTAACCATCACCTGTAGAGTGTCTGGAGCTTCTATCACTGATAGCAGCAGCCACTATGGAACAGCTTGGAttcgacaacctgcaggaaaaactCTGGAATGGATCAATTTAATTTACTATGATGGGGATATTGCTAAGAAAGAATCACTTAAAGACAAGTTTGTCATCTCTCGAGACACTTCCAGTAACAGTGTGACCTTACGGGGACAGaacatgcagactgaagacacagctgtgtattactgcgctcg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU254636 lncRNA upstream 24427 21774223 ~ 21807343 (+) True G215064
TU254625 lncRNA upstream 113694 21717692 ~ 21718076 (+) True G215055
TU254607 lncRNA upstream 174935 21656261 ~ 21656835 (+) True G215042
TU254346 lncRNA upstream 196696 21634851 ~ 21635074 (+) True G214829
TU254342 lncRNA upstream 214476 21617095 ~ 21617294 (+) True G214825
XR_004579408.1 lncRNA downstream 48135 21888031 ~ 21888800 (+) True LOC117598973
XR_004579405.1 lncRNA downstream 72716 21912612 ~ 21913349 (+) True LOC117598970
TU254643 lncRNA downstream 76523 21916419 ~ 21995065 (+) True G215069
TU254658 lncRNA downstream 84082 21923978 ~ 21935017 (+) False G215075
TU254659 lncRNA downstream 84082 21923978 ~ 21966233 (+) True G215075
XM_034309812.1 mRNA upstream 199864 21620631 ~ 21631906 (+) True rest
XM_034309844.1 mRNA upstream 267969 21514573 ~ 21563801 (+) False LOC113540569
XM_034309814.1 mRNA downstream 623258 22463154 ~ 22490911 (+) True LOC113546930
XM_034309815.1 mRNA downstream 697606 22537502 ~ 22548866 (+) True LOC113546929
XM_026947097.2 mRNA downstream 774963 22614859 ~ 22621980 (+) True cckb
XM_034310060.1 mRNA downstream 893839 22733735 ~ 22754432 (+) False rnf44
XM_034310059.1 mRNA downstream 901044 22740940 ~ 22754432 (+) True rnf44
LOC117598860 other upstream 1631 21829547 ~ 21830139 (+) True LOC117598860
LOC117598939 other upstream 7658 21823669 ~ 21824112 (+) True LOC117598939
LOC117598777 other upstream 100701 21730403 ~ 21731069 (+) True LOC117598777
LOC117598855 other upstream 104449 21726462 ~ 21727321 (+) True LOC117598855
LOC117598966 other upstream 110709 21720633 ~ 21721061 (+) True LOC117598966
LOC117598912 other downstream 4950 21844846 ~ 21845329 (+) True LOC117598912
LOC117598851 other downstream 7462 21847358 ~ 21848007 (+) True LOC117598851
TU254640 other downstream 7499 21847395 ~ 21847896 (+) False LOC117598851
LOC117598872 other downstream 9360 21849256 ~ 21850054 (+) True LOC117598872
LOC117598928 other downstream 15833 21855729 ~ 21856436 (+) True LOC117598928

Expression Profile