Gene
RNA
| Item | Value |
|---|---|
| RNA id | LOC117598961 |
| length | 339 |
| RNA type | V_segment |
| GC content | 0.47 |
| exon number | 2 |
| gene id | LOC117598961 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047607.1 |
| NCBI id | CM018553.1 |
| chromosome length | 26458119 |
| location | 22142085 ~ 22142516 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| id | name | namespace |
|---|---|---|
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds | molecular_function |
| GO:0061783 | peptidoglycan muralytic activity | molecular_function |
| GO:0003796 | lysozyme activity | molecular_function |
| id | description |
|---|---|
| ko00730 | Thiamine metabolism |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| XR_004579409.1 | lncRNA | upstream | 2752 | 22137295 ~ 22139333 (+) | True | LOC117598974 |
| TU254689 | lncRNA | upstream | 9076 | 22077490 ~ 22133009 (+) | True | G215095 |
| TU254686 | lncRNA | upstream | 82329 | 22058344 ~ 22059756 (+) | True | G215093 |
| TU254600 | lncRNA | upstream | 121350 | 22015818 ~ 22020735 (+) | True | G215035 |
| TU254659 | lncRNA | upstream | 175852 | 21923978 ~ 21966233 (+) | True | G215075 |
| TU254726 | lncRNA | downstream | 118375 | 22260891 ~ 22282993 (+) | True | G215127 |
| TU254755 | lncRNA | downstream | 197705 | 22340221 ~ 22343637 (+) | True | G215149 |
| TU254759 | lncRNA | downstream | 259434 | 22401950 ~ 22405524 (+) | True | G215153 |
| TU255084 | lncRNA | downstream | 582171 | 22724687 ~ 22726646 (+) | True | G215294 |
| TU255128 | lncRNA | downstream | 593255 | 22735771 ~ 22735986 (+) | True | G215336 |
| XM_034309812.1 | mRNA | upstream | 510179 | 21620631 ~ 21631906 (+) | True | rest |
| XM_034309844.1 | mRNA | upstream | 578284 | 21514573 ~ 21563801 (+) | False | LOC113540569 |
| XM_034309814.1 | mRNA | downstream | 320638 | 22463154 ~ 22490911 (+) | True | LOC113546930 |
| XM_034309815.1 | mRNA | downstream | 394986 | 22537502 ~ 22548866 (+) | True | LOC113546929 |
| XM_026947097.2 | mRNA | downstream | 472343 | 22614859 ~ 22621980 (+) | True | cckb |
| XM_034310060.1 | mRNA | downstream | 591219 | 22733735 ~ 22754432 (+) | False | rnf44 |
| XM_034310059.1 | mRNA | downstream | 598424 | 22740940 ~ 22754432 (+) | True | rnf44 |
| LOC117598906 | other | upstream | 830 | 22140784 ~ 22141255 (+) | True | LOC117598906 |
| TU254585 | other | upstream | 10903 | 22126928 ~ 22131182 (+) | True | LOC117598947 |
| LOC117598947 | other | upstream | 10909 | 22126937 ~ 22131176 (+) | False | LOC117598947 |
| TU254598 | other | upstream | 21622 | 22119975 ~ 22120463 (+) | True | LOC117598959 |
| LOC113546937 | other | downstream | 2434 | 22144950 ~ 22145717 (+) | True | LOC113546937 |
| LOC117598805 | other | downstream | 4615 | 22147131 ~ 22148445 (+) | True | LOC117598805 |
| LOC117598903 | other | downstream | 10423 | 22152939 ~ 22153426 (+) | True | LOC117598903 |
| LOC117598874 | other | downstream | 18009 | 22160525 ~ 22161315 (+) | True | LOC117598874 |
| TU254592 | other | downstream | 24326 | 22166842 ~ 22203806 (+) | True | G215027 |
