RNA id: TU254576


Basic Information

Item Value
RNA id TU254576
length 483
RNA type TUCP
GC content 0.44
exon number 3
gene id LOC117598965
representative True

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 22075405 ~ 22087412 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

tttaaatatgttttaaatacGttctcctcccatcatcagcagataagcaaatacaagcgtcagggctggatatcactctatttatgtgatgtgatggtctctgttaaactttggagaacagagaagaccccagtacaaacaacacacaccatgttctctacatctctactgctcctgctggcagctgcttcctatgtgcatggtgtggaactgactcagcctgcttccatgacagtccagccaggccagagtctctccatcccctgcaaggtttcatattcagttacgagCTATACTACACATTGgatccgacaacctgcaggaaaagctctggagtggattggaTACATTGATAGTGATGGGGATACAGcttacagtgacaaactgaaaaacaagttcagcatctccagagacactgctactaacacaataacaattcgaggacagaatctgcaaactcaagacacagctgtgtattactgc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU254686 lncRNA upstream 15649 22058344 ~ 22059756 (+) True G215093
TU254600 lncRNA upstream 54670 22015818 ~ 22020735 (+) True G215035
TU254643 lncRNA upstream 80340 21916419 ~ 21995065 (+) True G215069
TU254659 lncRNA upstream 109172 21923978 ~ 21966233 (+) True G215075
TU254658 lncRNA upstream 140388 21923978 ~ 21935017 (+) False G215075
TU254702 lncRNA downstream 45793 22133202 ~ 22401320 (+) True G215107
XR_004579409.1 lncRNA downstream 49886 22137295 ~ 22139333 (+) True LOC117598974
TU254726 lncRNA downstream 173482 22260891 ~ 22282993 (+) True G215127
TU254755 lncRNA downstream 252812 22340221 ~ 22343637 (+) True G215149
TU254759 lncRNA downstream 314541 22401950 ~ 22405524 (+) True G215153
XM_034309812.1 mRNA upstream 443499 21620631 ~ 21631906 (+) True rest
XM_034309844.1 mRNA upstream 511604 21514573 ~ 21563801 (+) False LOC113540569
XM_034309814.1 mRNA downstream 375745 22463154 ~ 22490911 (+) True LOC113546930
XM_034309815.1 mRNA downstream 450093 22537502 ~ 22548866 (+) True LOC113546929
XM_026947097.2 mRNA downstream 527450 22614859 ~ 22621980 (+) True cckb
XM_034310060.1 mRNA downstream 646326 22733735 ~ 22754432 (+) False rnf44
XM_034310059.1 mRNA downstream 653531 22740940 ~ 22754432 (+) True rnf44
LOC117598801 other upstream 1836 22073061 ~ 22073569 (+) True LOC117598801
TU254579 other upstream 1908 22053874 ~ 22073497 (+) True G215014
LOC117598890 other upstream 5580 22068955 ~ 22069825 (+) True LOC117598890
LOC117598943 other upstream 10322 22064562 ~ 22065083 (+) True LOC117598943
TU254563 other upstream 10408 22039652 ~ 22064997 (+) True G214998
LOC117598893 other downstream 2228 22089637 ~ 22090103 (+) True LOC117598893
LOC117598803 other downstream 3954 22091363 ~ 22091837 (+) True LOC117598803
LOC117598915 other downstream 16227 22103636 ~ 22104185 (+) True LOC117598915
LOC117598894 other downstream 18379 22105788 ~ 22106309 (+) True LOC117598894
LOC117598913 other downstream 20195 22107604 ~ 22108104 (+) True LOC117598913

Expression Profile