RNA id: LOC117598966


Basic Information

Item Value
RNA id LOC117598966
length 336
RNA type V_segment
GC content 0.46
exon number 2
gene id LOC117598966
representative True

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 21720633 ~ 21721061 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

atgttctctacatctctactgctcctgctggcagctgcttcctatgtgcatggtgAGGAACTGTctcagcctgcttccatgacagtccagccaggccagagtctctccatcccctgcaaggtttcatattcagttacgagCCATTATACAGGTTGgatccgacaacctgcaggaaaagctctggagtggattggaTACATCACTACTGGTGGGAGTACAtattacagtgacaaactgaaaaacaagttcagcatctccagagacactgctactaacacaataacaattcgaggacagaatctgcaaactgaagacacagctgtgtattactgctaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU254625 lncRNA upstream 2557 21717692 ~ 21718076 (+) True G215055
TU254607 lncRNA upstream 63798 21656261 ~ 21656835 (+) True G215042
TU254346 lncRNA upstream 85559 21634851 ~ 21635074 (+) True G214829
TU254342 lncRNA upstream 103339 21617095 ~ 21617294 (+) True G214825
TU254247 lncRNA upstream 155257 21557990 ~ 21565376 (+) True LOC113540569
TU254629 lncRNA downstream 3550 21724611 ~ 22137078 (+) True G215059
TU254636 lncRNA downstream 53162 21774223 ~ 21807343 (+) True G215064
XR_004579408.1 lncRNA downstream 166970 21888031 ~ 21888800 (+) True LOC117598973
XR_004579405.1 lncRNA downstream 191551 21912612 ~ 21913349 (+) True LOC117598970
TU254643 lncRNA downstream 195358 21916419 ~ 21995065 (+) True G215069
XM_034309812.1 mRNA upstream 88727 21620631 ~ 21631906 (+) True rest
XM_034309844.1 mRNA upstream 156832 21514573 ~ 21563801 (+) False LOC113540569
XM_034309814.1 mRNA downstream 742093 22463154 ~ 22490911 (+) True LOC113546930
XM_034309815.1 mRNA downstream 816441 22537502 ~ 22548866 (+) True LOC113546929
XM_026947097.2 mRNA downstream 893798 22614859 ~ 22621980 (+) True cckb
XM_034310060.1 mRNA downstream 1012674 22733735 ~ 22754432 (+) False rnf44
XM_034310059.1 mRNA downstream 1019879 22740940 ~ 22754432 (+) True rnf44
LOC117598875 other upstream 6009 21713929 ~ 21714624 (+) True LOC117598875
LOC117598918 other upstream 8855 21711315 ~ 21711778 (+) True LOC117598918
TU254575 other upstream 8864 21664558 ~ 21711769 (+) True G215010
LOC117598775 other upstream 51751 21668341 ~ 21668882 (+) True LOC117598775
LOC117598774 other upstream 54889 21664594 ~ 21665744 (+) True LOC117598774
LOC117598855 other downstream 5401 21726462 ~ 21727321 (+) True LOC117598855
LOC117598777 other downstream 9342 21730403 ~ 21731069 (+) True LOC117598777
LOC117598939 other downstream 102608 21823669 ~ 21824112 (+) True LOC117598939
LOC117598860 other downstream 108486 21829547 ~ 21830139 (+) True LOC117598860
LOC117598953 other downstream 110704 21831765 ~ 21832218 (+) False LOC117598953

Expression Profile