Gene
RNA
| Item | Value |
|---|---|
| RNA id | LOC117598992 |
| length | 513 |
| RNA type | V_segment |
| GC content | 0.44 |
| exon number | 2 |
| gene id | LOC117598992 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047607.1 |
| NCBI id | CM018553.1 |
| chromosome length | 26458119 |
| location | 21658502 ~ 21659107 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU254607 | lncRNA | upstream | 1667 | 21656261 ~ 21656835 (+) | True | G215042 |
| TU254346 | lncRNA | upstream | 23428 | 21634851 ~ 21635074 (+) | True | G214829 |
| TU254342 | lncRNA | upstream | 41208 | 21617095 ~ 21617294 (+) | True | G214825 |
| TU254247 | lncRNA | upstream | 93126 | 21557990 ~ 21565376 (+) | True | LOC113540569 |
| TU254249 | lncRNA | upstream | 102101 | 21551549 ~ 21556401 (+) | True | G214747 |
| TU254625 | lncRNA | downstream | 58585 | 21717692 ~ 21718076 (+) | True | G215055 |
| TU254629 | lncRNA | downstream | 65504 | 21724611 ~ 22137078 (+) | True | G215059 |
| TU254636 | lncRNA | downstream | 115116 | 21774223 ~ 21807343 (+) | True | G215064 |
| XR_004579408.1 | lncRNA | downstream | 228924 | 21888031 ~ 21888800 (+) | True | LOC117598973 |
| XR_004579405.1 | lncRNA | downstream | 253505 | 21912612 ~ 21913349 (+) | True | LOC117598970 |
| XM_034309812.1 | mRNA | upstream | 26596 | 21620631 ~ 21631906 (+) | True | rest |
| XM_034309844.1 | mRNA | upstream | 94701 | 21514573 ~ 21563801 (+) | False | LOC113540569 |
| XM_034309814.1 | mRNA | downstream | 804047 | 22463154 ~ 22490911 (+) | True | LOC113546930 |
| XM_034309815.1 | mRNA | downstream | 878395 | 22537502 ~ 22548866 (+) | True | LOC113546929 |
| XM_026947097.2 | mRNA | downstream | 955752 | 22614859 ~ 22621980 (+) | True | cckb |
| XM_034310060.1 | mRNA | downstream | 1074628 | 22733735 ~ 22754432 (+) | False | rnf44 |
| XM_034310059.1 | mRNA | downstream | 1081833 | 22740940 ~ 22754432 (+) | True | rnf44 |
| TU254580 | other | upstream | 9350 | 21646080 ~ 21649152 (+) | True | G215015 |
| LOC117598748 | other | upstream | 10699 | 21647236 ~ 21647803 (+) | True | LOC117598748 |
| LOC117598747 | other | upstream | 11879 | 21645852 ~ 21646623 (+) | True | LOC117598747 |
| TU254300 | other | upstream | 309673 | 21341247 ~ 21348829 (+) | False | hopx |
| LOC117599000 | other | downstream | 1318 | 21660425 ~ 21661039 (+) | True | LOC117599000 |
| TU254587 | other | downstream | 3977 | 21663084 ~ 22000809 (+) | True | G215022 |
| LOC117598848 | other | downstream | 3988 | 21663095 ~ 21663540 (+) | True | LOC117598848 |
| TU254575 | other | downstream | 5451 | 21664558 ~ 21711769 (+) | True | G215010 |
| LOC117598774 | other | downstream | 5487 | 21664594 ~ 21665744 (+) | True | LOC117598774 |
