RNA id: TU240279


Basic Information

Item Value
RNA id TU240279
length 769
lncRNA type inter_gene
GC content 0.46
exon number 2
gene id G202982
representative True

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 38437 ~ 51075 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

cagaaacacactgagacagaaacacacactgagacagaaacacactgagacagaaacacactgagacagaaacacccactgagacaaaaacacacactgagacacacactgagacagaaacacacactgagacagaaacacacactgagacagaaacacactgagacacacactgagacacacactgagacagacacacacactgagacagacacacactgagacagaaacacactgagacagaaacacacactgagacacacactgagacagaaacacactgagacagaaacacccactgagacagaaacacccactgagacagaaacacccactgagacacacactgagacagaaacacactgagacacacactgagacagaaacacacactgaaacacacactgagacacacactgagacagaaacacactgagacacacactgagacagaaacacacactgagacagaaacacactgagacagaaacacactgagacagaaacacacactgagacagaaacacccactgagacagaaacacactgagacacacactgagacagaaacacactgagacagaaacacattgagacacacactgagacagacacacactgagacagaaacacacactgagacacacactgagacagacacacactgagacagaaacacactgagacagaaacacactgagacagaaacacacactgagacacacacacactgagacagacacacacactgagacacacactgagacag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU240262 lncRNA upstream 18234 19977 ~ 20203 (+) True G202968
TU240359 lncRNA downstream 93001 144076 ~ 146717 (+) True G203043
TU240360 lncRNA downstream 93001 144076 ~ 146553 (+) False G203043
TU240368 lncRNA downstream 107477 158552 ~ 158933 (+) True G203049
TU240381 lncRNA downstream 124358 175433 ~ 175991 (+) True G203058
TU240383 lncRNA downstream 124358 175433 ~ 175991 (+) False G203058
XM_026911773.2 mRNA upstream 32655 2041 ~ 5782 (+) True LOC113525294
XM_026911782.2 mRNA downstream 4486 55561 ~ 63406 (+) True syt5a
XM_034310096.1 mRNA downstream 119770 170845 ~ 171952 (+) False LOC117598847
XM_034310097.1 mRNA downstream 119770 170845 ~ 171952 (+) True LOC117598847
XM_034310145.1 mRNA downstream 215805 266880 ~ 269916 (+) False prl
XM_026911433.2 mRNA downstream 230137 281212 ~ 286434 (+) True LOC113525016
TU240364 other downstream 104252 155327 ~ 161112 (+) True G203046
TU240365 other downstream 105545 156620 ~ 163136 (+) True G203047
TU240433 other downstream 148185 199260 ~ 341276 (+) True G203077
TU240437 other downstream 150875 201950 ~ 202805 (+) True G203081
TU240434 other downstream 216504 267579 ~ 269820 (+) False prl

Expression Profile