RNA id: TU240318


Basic Information

Item Value
RNA id TU240318
length 341
lncRNA type sense_over
GC content 0.54
exon number 3
gene id aldh16a1
representative False

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 26642 ~ 54275 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TTgtgtgctgatgatgatgatattttgAGCTGCGCCTCTTCAGCTGCTGCAGGATTTAAAGTGTGGAAGGAGCTGAGTGACAATCGCAGAGCCAAAGTCCTGCTCAGGTTAGCGAGCGTACTGCAGAGGtacagccagtgtgtgtgtgaagtgtgtgatcTGTGTCAGACTCCTGGCTCCGCCCCCGCGCTCGTCCGACTAGCACAGTATTACGCTGGCTGGGCTCAGCTCCGACACACACTCCTGCCTGAGTGGAACCcacgaggtGTGGTTGCAGTggtgatgtcagatgatgtcTTTTTCTATTCCATGTGGCTGAAGGTCCTTCCAGCTCTTGCTGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU240326 lncRNA upstream 277 50132 ~ 52638 (-) True G203016
TU240336 lncRNA upstream 30775 80630 ~ 81157 (-) False pih1d1
TU240337 lncRNA upstream 30775 80630 ~ 81157 (-) False pih1d1
TU240341 lncRNA upstream 41399 91254 ~ 93136 (-) True G203027
TU240556 lncRNA upstream 108023 157878 ~ 160160 (-) True G203169
XM_026911769.1 mRNA downstream 29283 18347 ~ 19836 (-) True LOC113525292
XM_026911772.2 mRNA downstream 29334 11118 ~ 19785 (-) False LOC113525293
XM_026911781.2 mRNA upstream 15342 65197 ~ 78964 (-) False tnnt1
XM_026911780.2 mRNA upstream 15342 65197 ~ 78962 (-) True tnnt1
XM_034310143.1 mRNA upstream 30773 80628 ~ 103113 (-) True pih1d1
XM_034310095.1 mRNA upstream 67019 116874 ~ 139838 (-) False LOC113525295
XM_026911774.2 mRNA upstream 67019 116874 ~ 139837 (-) True LOC113525295
TU240560 other upstream 112271 162126 ~ 162584 (-) True G203170
TU240540 other upstream 281686 331541 ~ 333644 (-) True G203154
TU240668 other upstream 436367 486222 ~ 489731 (-) False G203254
TU240992 other upstream 691389 741244 ~ 750799 (-) True G203488
TU240994 other upstream 691542 741397 ~ 743393 (-) False LOC117598978

Expression Profile