RNA id: TU240322


Basic Information

Item Value
RNA id TU240322
length 905
RNA type TUCP
GC content 0.44
exon number 5
gene id aldh16a1
representative False

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 26642 ~ 54275 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GAGCTTGTGAGTGACAGCGCTGCAGAACAGCACGTTTTATTTCCGAAATCCGTTATTAGTGCGGTTTTTGTTcgtttgtaattaattaattaaagttatCAAAACTTGCTATACTTTAAAACTTCGTATATTAAAGCGGTTCCGTTCTCATTTCCGGTTGAATCTGCGCTCTGTGTGTCGCTGCTTCATTAGCGGGGTTTAGCTCAGagagctacattagcctcaggACTTCAGAGACTCTCACcgcgctgtattattattattattattattattattattattattattattattgtttctataactGTTAGGGTTCTAGATAACAGACAGTTAAgcaggtgtgagtgtgtgtcagtgtgtgttatggcAGAGAGAAGCTCACACAGTGTGTACAACATCTTTAAGTCCATGGAGCTGGGACCTGGTGCTGAGAGTTCAGCTGTTACTGCAGGGTCATGGTTGGAGCAGCACTCTCGTTCTCTCAGCCTGTTTATTGACGGGAAGTTTGTGCACCCGGATAACAGACAGACACTCACAGTTTCTGATTCGAAAGGTGAGAATTTGTGCAGCATCGTgtgtgctgatgatgatgatattttgAGCTGCGCCTCTTCAGCTGCTGCAGGATTTAAAGTGTGGAAGGAGCTGAGTGACAATCGCAGAGCCAAAGTCCTGCTCAGGTACAGACACAAAGTCCTGCTCAGGTACAGACACAAAGTCCTGCTCAGGTACAGACACAAAGTCCTGCTCAGGTACAGACACAAAGCTCTGCTCAGGTACAGACACAAAGCTCTGCTCAGGTACAGACACAAAGCTCTGCTCAGGTACAGACACAAAGTCCTGCTCAGGTACAGACACAAAGCTCTGCTCAGGTACAGACACAAAGCTCTGCTCAGGTACAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU240336 lncRNA upstream 26355 80630 ~ 81157 (-) False pih1d1
TU240337 lncRNA upstream 26355 80630 ~ 81157 (-) False pih1d1
TU240341 lncRNA upstream 36979 91254 ~ 93136 (-) True G203027
TU240556 lncRNA upstream 103603 157878 ~ 160160 (-) True G203169
TU240566 lncRNA upstream 121243 175518 ~ 175992 (-) False G203173
XM_026911769.1 mRNA downstream 17763 18347 ~ 19836 (-) True LOC113525292
XM_026911772.2 mRNA downstream 17814 11118 ~ 19785 (-) False LOC113525293
XM_026911781.2 mRNA upstream 10922 65197 ~ 78964 (-) False tnnt1
XM_026911780.2 mRNA upstream 10922 65197 ~ 78962 (-) True tnnt1
XM_034310143.1 mRNA upstream 26353 80628 ~ 103113 (-) True pih1d1
XM_034310095.1 mRNA upstream 62599 116874 ~ 139838 (-) False LOC113525295
XM_026911774.2 mRNA upstream 62599 116874 ~ 139837 (-) True LOC113525295
TU240560 other upstream 107851 162126 ~ 162584 (-) True G203170
TU240540 other upstream 277266 331541 ~ 333644 (-) True G203154
TU240668 other upstream 431947 486222 ~ 489731 (-) False G203254
TU240992 other upstream 686969 741244 ~ 750799 (-) True G203488
TU240994 other upstream 687122 741397 ~ 743393 (-) False LOC117598978

Expression Profile