RNA id: TU240336


Basic Information

Item Value
RNA id TU240336
length 333
lncRNA type sense_over
GC content 0.50
exon number 3
gene id pih1d1
representative False

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 80628 ~ 103113 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

cctcctctctgtctctgtctctcctcctctctgtctctcctcctgtctgcctctcctcctctctgtctctgtctctcctcctgtctgtctctcctcctctctgtctctcagtcatCTGTTCGGTCTTTGGTGCTGGATTTAGGAGAGGACAGACTGGTGTTGAACGCTCGTCCCTCTCTCTTCTACCTGGACATTTTCCTCCCCTTCCTCATCGATCAGGAGAACAGCGGAGCTCAGtataacactgacacacaggtccTCACAGTGACCATGCCGGTGATCTCGTCCTAAAACAACTGTCATATTTATTTCCAATAAAACCTTTAGATTTTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU240326 lncRNA downstream 27992 50132 ~ 52638 (-) True G203016
TU240320 lncRNA downstream 30775 48980 ~ 49855 (-) False aldh16a1
TU240341 lncRNA upstream 10097 91254 ~ 93136 (-) True G203027
TU240556 lncRNA upstream 76721 157878 ~ 160160 (-) True G203169
TU240566 lncRNA upstream 94361 175518 ~ 175992 (-) False G203173
TU240563 lncRNA upstream 94469 175626 ~ 175992 (-) True G203173
TU240564 lncRNA upstream 94469 175626 ~ 175992 (-) False G203173
XM_026911781.2 mRNA downstream 1666 65197 ~ 78964 (-) False tnnt1
XM_026911780.2 mRNA downstream 1668 65197 ~ 78962 (-) True tnnt1
XM_034310218.1 mRNA downstream 26355 26642 ~ 54275 (-) True aldh16a1
XM_026911769.1 mRNA downstream 60794 18347 ~ 19836 (-) True LOC113525292
XM_026911772.2 mRNA downstream 60845 11118 ~ 19785 (-) False LOC113525293
XM_034310095.1 mRNA upstream 35717 116874 ~ 139838 (-) False LOC113525295
XM_026911774.2 mRNA upstream 35717 116874 ~ 139837 (-) True LOC113525295
XM_034310144.1 mRNA upstream 63011 144168 ~ 200392 (-) True cpt1cb
XM_034310104.1 mRNA upstream 122714 203871 ~ 250572 (-) True si:dkey-16p21.7
XM_034310105.1 mRNA upstream 122714 203871 ~ 250569 (-) False si:dkey-16p21.7
TU240319 other downstream 26355 37599 ~ 54275 (-) False aldh16a1
TU240560 other upstream 80969 162126 ~ 162584 (-) True G203170
TU240540 other upstream 250384 331541 ~ 333644 (-) True G203154
TU240668 other upstream 405065 486222 ~ 489731 (-) False G203254
TU240992 other upstream 660087 741244 ~ 750799 (-) True G203488
TU240994 other upstream 660240 741397 ~ 743393 (-) False LOC117598978

Expression Profile