RNA id: TU240341


Basic Information

Item Value
RNA id TU240341
length 268
lncRNA type intronic
GC content 0.47
exon number 2
gene id G203027
representative True

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 91254 ~ 93136 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ggtgtgtagtgtgagtgaggtaatgagatcaggtgcgtagtgtgagtgaggtaatgagatcaggtgcgTAGTGGtagtgaggtaatgagatcaggtgtgtAGTGGTAGTGAGGTAATGAGATAAGGTGCGTAAtgtgagtgaggtaatgagatcaggtgcgtagtgtgagtgaggtaatgagatcaggtgcgtagtgtgagtgaggtaatgagatcaggtgcgtaatgtgagtgaggtaatgagatcaggtccgtagtgtgagtgagg

Function

GO: NA

KEGG:

id description
ko03450 Non-homologous end-joining

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU240336 lncRNA downstream 10097 80630 ~ 81157 (-) False pih1d1
TU240337 lncRNA downstream 10097 80630 ~ 81157 (-) False pih1d1
TU240326 lncRNA downstream 38616 50132 ~ 52638 (-) True G203016
TU240320 lncRNA downstream 41399 48980 ~ 49855 (-) False aldh16a1
TU240556 lncRNA upstream 64742 157878 ~ 160160 (-) True G203169
TU240566 lncRNA upstream 82382 175518 ~ 175992 (-) False G203173
TU240563 lncRNA upstream 82490 175626 ~ 175992 (-) True G203173
TU240564 lncRNA upstream 82490 175626 ~ 175992 (-) False G203173
TU240565 lncRNA upstream 82490 175626 ~ 175992 (-) False G203173
XM_026911781.2 mRNA downstream 12290 65197 ~ 78964 (-) False tnnt1
XM_026911780.2 mRNA downstream 12292 65197 ~ 78962 (-) True tnnt1
XM_034310218.1 mRNA downstream 36979 26642 ~ 54275 (-) True aldh16a1
XM_026911769.1 mRNA downstream 71418 18347 ~ 19836 (-) True LOC113525292
XM_026911772.2 mRNA downstream 71469 11118 ~ 19785 (-) False LOC113525293
XM_034310095.1 mRNA upstream 23738 116874 ~ 139838 (-) False LOC113525295
XM_026911774.2 mRNA upstream 23738 116874 ~ 139837 (-) True LOC113525295
XM_034310144.1 mRNA upstream 51032 144168 ~ 200392 (-) True cpt1cb
XM_034310104.1 mRNA upstream 110735 203871 ~ 250572 (-) True si:dkey-16p21.7
XM_034310105.1 mRNA upstream 110735 203871 ~ 250569 (-) False si:dkey-16p21.7
TU240319 other downstream 36979 37599 ~ 54275 (-) False aldh16a1
TU240560 other upstream 68990 162126 ~ 162584 (-) True G203170
TU240540 other upstream 238405 331541 ~ 333644 (-) True G203154
TU240668 other upstream 393086 486222 ~ 489731 (-) False G203254
TU240992 other upstream 648108 741244 ~ 750799 (-) True G203488
TU240994 other upstream 648261 741397 ~ 743393 (-) False LOC117598978

Expression Profile