RNA id: TU240359


Basic Information

Item Value
RNA id TU240359
length 2343
lncRNA type inter_gene
GC content 0.42
exon number 3
gene id G203043
representative True

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 144076 ~ 146717 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CcacacgtttatttatttattttgaagtaCAGCTTTAACGCATCTGTGATCAGCCTGTTGGTGAAAATGTACAAAGTAAACGCACCCTCTCAAACATTcaacagtttatttattcaagaacaCGAATTTCCCTGTTTAACATTTTGGTTAAAGCTGAAACAGTTTGGGAATTAAattttcaccacacacacacacatataaattatacacataagagaaaaacattcatatGAACACCAAACAGATAATCAGGTTCCCCTTTAGTAAGCTTTTGCATTGCTTTGGCATAGTCATTGAATTTGTCAATGTAGtactaaaatattttgcattgtgATTGCATTGTGCATTTTAACGCATTAAGCAAAGTTATTGCATTGTTACTGCATCATGTGAACACAGaatattaaaacagaaaatttcCAACACCAGCTTCATCCATAACTCCAGTCTAAttcaatcatttaaaaacagacaATTCCCATTTCAGTAAAATATCAAGATAACAGTTCTGTCTAGATGTTTAACAGTAGAgtattatataaacataaagaGAAACTCAATCTCACTACAGCGGCTGTTCAGTGACTCAATCAGAGAAATCTGCAGCtttaatttacattcattcatatgCAGATAAGTGAAGCGGGTTAGGGTTAGCGTTAGGGTTATCTCATGCATAAATGGTTACAGCATtaaacacttgtgtgtgtgggtttacaCAGTCATGGTAGGTGGTGACAGACGGGAAGCTTAAATTCAGTATGCCTACAGTGAAACCATTAGGTGATATATTATATCTCACTTACAGTATAATACAAATGATGgaactataacacacacacacacacacacacaagcctggATTAAACCTGCTTTTAACCATGTgtacacaagatggctgcctGTGTTTGGACTGTCGCTTGTGAACGTTCTCAGAACTTAACGCTACACGTCTGTGTGGTCCAATACCgatgtaaacagtgtaaacagtgtaacaACGTAAACAGCGCTGCGCCTCAAATCACACGTGTACCATTCTAAACCGTTAtcgagtactaacactaaccggttttcctattacagttagggTTTAACACTTCTCATGTAGCCTTCTTTGTACCGATCTTCTGGATTCGATTTGAGAAGCAGCCCATGACAACAGTCACGATGACGGtgtaaagctttaaagaaagacagagtgtgtttactgtcagtgtgtttactatCACTGTGGAGGAAATCGCTAAACATGACTAATCTTATGCCTCTGTCCTAGTAATGTATacgcagagtgtgtgtgcgtgtgtgtgtgtgtgtttattctgtctACTTTTACTTCCTCTTCTCTTCCAATGGCATTTTTGGGTGTAAAAAAATGATGACGGAGTAAATAATGCTCCTCGTGCACGCTCATTATCTCACGTACCCCTTCACTGATATTATGGAGGTGCGTGAAAAATATCGGTACAAACAGAAATCAGATCTAAGGGGGCGTGTCGTTCTGTGTGATCACCTGACTACCTTGACCATCACTGATTGGCTGTATGAATCTAGAGtctgtgggagaaaaaaatcagccccagccttgcttctcacttcacaccattctgtgtgttatCATTACGACCTGTTGATGGCGCTGCTGCACTCACTTacacaaaaaatccaaaatattcCACTTTGAAACATTAAACAGtgaataatctgatgtggagcCAAAAATGAAACGTTATACTAATGAGCTGCTAGCATATGCACACTAGCCTCCTCTGGATATATATGATCGTTTCCCCTGTGACTGATTCACTGCAGGTCTGAgaccatatctctctctctcacacacacacatacacacgtgcacgcacacacacacacacacacacacacgcacacagagttTATGGCTGTTTTTTCTCCACTGGTTTCTCAGAGTCGGCGCTGAACAGAGACATCAGGTCCTTTAAAGCTCGGCTGATCTGAGAACCAAACCTGCGCGAgttctgaaaacacacacacacacacacacacacacacacatgcacacacacactattagaACAATCCACCACACAAACATCTGGTCAGTGATGATTCCCTTTCACCAACAGATGAGGGACAGACAGGGGCAGATGAGGGACAGACAGGGGCAGATGAGGGACAGACAGGGGCAGATGAGGGACAGACAGGAGCAGATGAGGGACAGATAGGGGCAGATGAGGGACAGACAGGGGCAGATGAGGGACAGACAGGGGCATATGAGGGACAGACAGGAGCAGATGAGGGACAGATAGGGGCAGATGAGGGACAGATAGGAGCAGATGAGGGACAGACAGGGGCAGGTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU240279 lncRNA upstream 93001 38437 ~ 51075 (+) True G202982
TU240282 lncRNA upstream 102059 40638 ~ 42017 (+) True G202983
TU240262 lncRNA upstream 123873 19977 ~ 20203 (+) True G202968
TU240368 lncRNA downstream 11835 158552 ~ 158933 (+) True G203049
TU240381 lncRNA downstream 28716 175433 ~ 175991 (+) True G203058
TU240383 lncRNA downstream 28716 175433 ~ 175991 (+) False G203058
TU240438 lncRNA downstream 55233 201950 ~ 202805 (+) False G203081
TU240439 lncRNA downstream 55233 201950 ~ 202805 (+) False G203081
XM_026911782.2 mRNA upstream 80670 55561 ~ 63406 (+) True syt5a
XM_026911773.2 mRNA upstream 138294 2041 ~ 5782 (+) True LOC113525294
XM_034310096.1 mRNA downstream 24128 170845 ~ 171952 (+) False LOC117598847
XM_034310097.1 mRNA downstream 24128 170845 ~ 171952 (+) True LOC117598847
XM_034310145.1 mRNA downstream 120163 266880 ~ 269916 (+) False prl
XM_026911433.2 mRNA downstream 134495 281212 ~ 286434 (+) True LOC113525016
XM_034309955.1 mRNA downstream 134743 281460 ~ 286434 (+) False LOC113525016
TU240364 other downstream 8610 155327 ~ 161112 (+) True G203046
TU240365 other downstream 9903 156620 ~ 163136 (+) True G203047
TU240433 other downstream 52543 199260 ~ 341276 (+) True G203077
TU240437 other downstream 55233 201950 ~ 202805 (+) True G203081
TU240434 other downstream 120862 267579 ~ 269820 (+) False prl

Expression Profile