RNA id: TU240368


Basic Information

Item Value
RNA id TU240368
length 235
lncRNA type inter_gene
GC content 0.46
exon number 2
gene id G203049
representative True

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 158552 ~ 158933 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ggcagtatagaccgTACGTTTGGCAGTATAGATCGTATGATGGGCATTATAGATCGTACGTTCACcagtatagatcgtacgttcagcagtatagatcgtacgttcAGCAGTATAGATCGTATGATGGGCATtatagatcgtacgttcggcagtatagaccgtacgttcggcagtatagaccgtacgttcggcagtatagatcgtacgttcggcagtatagatgGTATGATGGGCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU240359 lncRNA upstream 11835 144076 ~ 146717 (+) True G203043
TU240360 lncRNA upstream 11999 144076 ~ 146553 (+) False G203043
TU240279 lncRNA upstream 107477 38437 ~ 51075 (+) True G202982
TU240282 lncRNA upstream 116535 40638 ~ 42017 (+) True G202983
TU240262 lncRNA upstream 138349 19977 ~ 20203 (+) True G202968
TU240381 lncRNA downstream 16500 175433 ~ 175991 (+) True G203058
TU240383 lncRNA downstream 16500 175433 ~ 175991 (+) False G203058
TU240438 lncRNA downstream 43017 201950 ~ 202805 (+) False G203081
TU240439 lncRNA downstream 43017 201950 ~ 202805 (+) False G203081
TU240466 lncRNA downstream 100258 259191 ~ 307393 (+) True G203108
XM_026911782.2 mRNA upstream 95146 55561 ~ 63406 (+) True syt5a
XM_026911773.2 mRNA upstream 152770 2041 ~ 5782 (+) True LOC113525294
XM_034310096.1 mRNA downstream 11912 170845 ~ 171952 (+) False LOC117598847
XM_034310097.1 mRNA downstream 11912 170845 ~ 171952 (+) True LOC117598847
XM_034310145.1 mRNA downstream 107947 266880 ~ 269916 (+) False prl
XM_026911433.2 mRNA downstream 122279 281212 ~ 286434 (+) True LOC113525016
XM_034309955.1 mRNA downstream 122527 281460 ~ 286434 (+) False LOC113525016
TU240433 other downstream 40327 199260 ~ 341276 (+) True G203077
TU240437 other downstream 43017 201950 ~ 202805 (+) True G203081
TU240434 other downstream 108646 267579 ~ 269820 (+) False prl
TU240520 other downstream 365879 524812 ~ 527620 (+) False LOC117598976
TU240776 other downstream 513291 672224 ~ 676839 (+) False thoc6

Expression Profile