RNA id: XM_034310145.1


Basic Information

Item Value
RNA id XM_034310145.1
length 1253
RNA type mRNA
GC content 0.52
exon number 4
gene id prl
representative False

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 266880 ~ 359354 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

tgattggttggtGGGTGGGATTAGTACCTGTATCCTTAAGGCACTGCAGATACCCACAAAAACAACTCACaaaatactgcacacacacacacacacgcatacgcacgcacgcacacacacacacacacacacacacacacacacacagctaattaTAGCACCGTATCGGCTCTGGCCTGAGTTACATGTGTGTTTGGGGTAAAAACAGTCTGCGAGAGGGAAAAGGGTGTTCCCTTAGTTTAACCAACATAGAAGATCAAATTCAGTGGACacaaaacaaagacacacacacacacacacacacacacacacacacacacactcagagctcTTGTGTAACTCATCTGATCAGTGTTTTAACGCCCGGCCTTTACATCCTGCTGCTCGTAATTAAAGTGAACCTGTTCATGCATTTAAAGGAGTGATGTTGGATTGGTCTGGAGCGGCGTCTCGTCCCGCATCCCGCGTCCTGCACCTGCACTTATTCATCACTCTGGACCCCGGGACAGTAATGTTTCTCATTTGGGGAATTCAGGAGCGAGCCGGTTTGGAGACAATGAGCTCCGAGTGAAAGACCTGCTCTACATACACTAATGAGACGAGAGCACAGAGAGTATATAACACTGACACGAGCGAGGATGTGACGCTCAACCCCAGAGACAGATTCATCACTGAGAGAGTGGACCACTGAACAcctgcagaagaagaagaagaagaagaagaagaagaagaagaagaagatggctCGATGCTGTAAATGCACCAGACTGCACCTGGCAGTGACGGTGCTGATGTGCGTCCTCGTCTACACTGAGGGAGTCAGTCTGAACGACCTGCTGGACCGAGCCTCACAGCTCTCCGACAAACTGCACTCACTCAGCACCTCGCTCACCAACGAcctgGACTCTCATTTCCCCCCAGTAGGAGGAAAGCTCATGAGGCCGTCCATGTGCCACACCTCGTCCCTGCAGATCCCCAACGATAAAGATCAGGCGCTCAGCGTACCGGAGAGCGAGCTTCTGTCTCTGGTTCGCTCTCTGCTCATGGCCTGGTCAGATCCTCTCGCTCTGCTGTCGTCTGAGGCCACCAGTCTGCCCCACCCTGAGCGCAACTCCATCAACACCAAGACCAGAGAGCTGCAGGACCACACCCACAGCCTGGGGGCCGGCCTCGAGCGCCTCGTCCGCAAGGTACACGCCCTTTCACTGTGGCACTCAGAGTGCAGCGTGTGGATAAAATCTCTGTTATATTGA

Function

GO:

id name namespace
GO:0043066 negative regulation of apoptotic process biological_process
GO:0005576 extracellular region cellular_component
GO:0005179 hormone activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU240438 lncRNA upstream 64075 201950 ~ 202805 (+) False G203081
TU240439 lncRNA upstream 64075 201950 ~ 202805 (+) False G203081
TU240381 lncRNA upstream 90889 175433 ~ 175991 (+) True G203058
TU240383 lncRNA upstream 90889 175433 ~ 175991 (+) False G203058
TU240368 lncRNA upstream 107947 158552 ~ 158933 (+) True G203049
TU240425 lncRNA downstream 16089 286005 ~ 338292 (+) False LOC113525016
TU240426 lncRNA downstream 16089 286005 ~ 305086 (+) False LOC113525016
TU240427 lncRNA downstream 16089 286005 ~ 367855 (+) False LOC113525016
TU240428 lncRNA downstream 16089 286005 ~ 287327 (+) False LOC113525016
TU240429 lncRNA downstream 16089 286005 ~ 317178 (+) False LOC113525016
XM_034310096.1 mRNA upstream 94928 170845 ~ 171952 (+) False LOC117598847
XM_034310097.1 mRNA upstream 94928 170845 ~ 171952 (+) True LOC117598847
XM_026911782.2 mRNA upstream 203474 55561 ~ 63406 (+) True syt5a
XM_026911773.2 mRNA upstream 261098 2041 ~ 5782 (+) True LOC113525294
XM_026911433.2 mRNA downstream 11296 281212 ~ 286434 (+) True LOC113525016
XM_034309955.1 mRNA downstream 11544 281460 ~ 286434 (+) False LOC113525016
XM_034309959.1 mRNA downstream 27755 297671 ~ 332191 (+) True ap2a1
XM_034309960.1 mRNA downstream 27756 297672 ~ 332191 (+) False ap2a1
XM_034309961.1 mRNA downstream 27756 297672 ~ 332191 (+) False ap2a1
TU240437 other upstream 64075 201950 ~ 202805 (+) True G203081
TU240365 other upstream 103744 156620 ~ 163136 (+) True G203047
TU240364 other upstream 105768 155327 ~ 161112 (+) True G203046
TU240520 other downstream 254896 524812 ~ 527620 (+) False LOC117598976
TU240776 other downstream 402308 672224 ~ 676839 (+) False thoc6
TU240792 other downstream 437858 707774 ~ 710443 (+) False rnf25
TU240780 other downstream 456891 726807 ~ 732854 (+) False si:dkey-16l2.17
TU240808 other downstream 483359 753275 ~ 758058 (+) False fus

Expression Profile