RNA id: TU240429


Basic Information

Item Value
RNA id TU240429
length 1264
lncRNA type read_through
GC content 0.47
exon number 2
gene id LOC113525016
representative False

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 281212 ~ 367855 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CTCccaattttattgttttattaaaaaaaaaaaaaaaacaaacaaacgcaGAAAAAATTGAATGTACTTCTAATGGACACAATTTTAGCCAGCTGTAGCCCAGAGCAgtgatgaacacacactgaacctcAACACACTCGGACACTGTTCTTCGTTTACGCTCGTAATAACACTACAGATATTAAACCTAAAGGAGACGTCAGGCCCAGTTTAGTTCTTTATGTTTCTCTAACACTGATTCTCGGAGCTCAGGAGGGGAGAAACACCTCGTTTCTCAGACGTACACGAAGCGGAGTTAAACCGCGACACGTCCGCGCCGAAAACAGCTCAGCGTTAGACTTTATTTCACAGACGATTCGGGTCAGAACGCAGCTCGGTGTTCGCGTGCCCGCGGGAGGCGCTGGGAGAGTCGAGGCTCGTTTTCTAACAGCGAAACGACTAAAACGCGACCAGTCTGAAATCCGCACCTTCGGGTTTTTCCCCCTCACACAAAACAAAGTGAGTTTTAAAAACCGACTGTGGAACTTcagcacaaaataaaaccagagaGTGAACCGTTATTAGAGCGCCCCCTAGTGACCACACGGACACACTGCAGAGTGAGAACAGGACGCGAGCACAGCTTCAcgttcagccaatcacagagccCGGCTCAGGCTCCGAACTGCAGCCTGGATTCATGACGTGCCACTTGTTTAAACACAGAAGATGGAGGATTAGTAAATGGAatttcaaaaatacaccaaTGATCGACTTGCATTTGCCCTCAAACACGCAGACACACGCTGATGGAGAGGAGCAACCAAACCGTCACAGGAGGCTCTTCATCTTACCCAACTAAATACTAGAAATCAAAACGGGACAGGTGCGTTGCCGTGACAACAGGATCCATGACTGCACAACAGGTTAAAGTGGCTGAACATGAACACTATGTACAGGCGAGAGGGAGCCAgcgcatctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagagagagagaatcgaGACACCCTGTTACCGGCTGAATGACTCCAGCACAAGGGGAAAATAATAAACGCATCCTGTGTGAATATTGCACAATAAAAACACCGCTGCGTCGTCATTGTATAGAAACTCAAAGTGTCCGTGTGTAAGTGTATAAAAGTCCTTCAGGGATCATCATCAGCGCCAGGGCTCTCTCTAAAAGgaatgaccacacacacacacacacacacacacacacacacacacacacacacacacacacagaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU240438 lncRNA upstream 83200 201950 ~ 202805 (+) False G203081
TU240439 lncRNA upstream 83200 201950 ~ 202805 (+) False G203081
TU240381 lncRNA upstream 110014 175433 ~ 175991 (+) True G203058
TU240383 lncRNA upstream 110014 175433 ~ 175991 (+) False G203058
TU240368 lncRNA upstream 127072 158552 ~ 158933 (+) True G203049
TU240411 lncRNA downstream 20864 338042 ~ 359354 (+) True prl
TU240415 lncRNA downstream 128296 445474 ~ 503897 (+) True G203071
TU240501 lncRNA downstream 192741 509919 ~ 512745 (+) False G203134
TU240503 lncRNA downstream 192741 509919 ~ 512745 (+) True G203134
TU240514 lncRNA downstream 196411 513589 ~ 515888 (+) True G203135
XM_034310145.1 mRNA upstream 16089 266880 ~ 269916 (+) False prl
XM_034310096.1 mRNA upstream 114053 170845 ~ 171952 (+) False LOC117598847
XM_034310097.1 mRNA upstream 114053 170845 ~ 171952 (+) True LOC117598847
XM_026911782.2 mRNA upstream 222599 55561 ~ 63406 (+) True syt5a
XM_026911773.2 mRNA upstream 280223 2041 ~ 5782 (+) True LOC113525294
XM_034309954.1 mRNA downstream 19843 337021 ~ 340158 (+) True si:ch211-195b15.8
XM_034310279.1 mRNA downstream 30544 347722 ~ 356931 (+) True rras
XM_026911411.2 mRNA downstream 46199 363377 ~ 369013 (+) True prrg2
XM_026911412.2 mRNA downstream 46200 363378 ~ 369013 (+) False prrg2
XM_034309702.1 mRNA downstream 53388 370566 ~ 404291 (+) True prr12b
TU240434 other upstream 16185 267579 ~ 269820 (+) False prl
TU240437 other upstream 83200 201950 ~ 202805 (+) True G203081
TU240365 other upstream 122869 156620 ~ 163136 (+) True G203047
TU240364 other upstream 124893 155327 ~ 161112 (+) True G203046
TU240520 other downstream 207634 524812 ~ 527620 (+) False LOC117598976
TU240776 other downstream 355046 672224 ~ 676839 (+) False thoc6
TU240792 other downstream 390596 707774 ~ 710443 (+) False rnf25
TU240780 other downstream 409629 726807 ~ 732854 (+) False si:dkey-16l2.17
TU240808 other downstream 436097 753275 ~ 758058 (+) False fus

Expression Profile