RNA id: XM_034309955.1


Basic Information

Item Value
RNA id XM_034309955.1
length 4238
RNA type mRNA
GC content 0.42
exon number 2
gene id LOC113525016
representative False

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 281212 ~ 367855 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CCATCGCTTTTAAATTTTTGTCCCCCTAAACACACTGAAGCtcttaaaccacacacacacacacacacaccatggagAAAGCTGTGATGACAGATCAGAGAGCGGATCTGCGGATTGTCCTTGTAGGAAAAACTGGCGTGGGAAAAAGTGCAACAGGAAACACCATCCTCAACAAAGAGGTTTTCCACAAAGAGGCCAGTTCCCTGTCGGTGACGAAGGCCTGTAAGATGGCCACCACCACACTTCATGGCTGCAACCTGGTGGTGGTGGACACTCCAGGATGGTGTGACACAGATCTCTCCGAGGCCGAAATCGTCCAGGAAACAATCCAGTGCATCGACATGTCCTACCCTGGACCTCACGTGTTCCTGCTGGTGGTGCCAATCGGTCGCTTCACCGAGGAGGAATCCAAAGCTGTCCAAATGATCCAGGAGGTGTTTGGAGAAGGAGCCACCAGATACATGATGATCGTGTTTACGAGAGGAGACGATCTGGAGGACAAAGGCATTGACGACTACTTGGCCAACGCCAAGGCCGAGCTCAAGAACCTGGTGGACAAGTGCGGGAGAAGATACCACGTGCTCACCAACAGGGAGCAGAACAACCGCAACCAAGTGCACATGCTTCTGATGAAGATCCAAGACATGGTGCAAGGGAACGGAGGAAACTGCTACACCAACACCACGTACCAGCTGCTGGACACCTACAAGAGGAAAGAAGCTGAGATCCAGAAGCAAATCAGGAGCGCggagagagagatgcaaatGAAAGAGGCTGAGTTTCGGTGGAAGATGGTCCTCATGCAGCAGGagcaacagcagcagaagaTGCGAGAGTCTGAGCTGAAGGGCCAGCTGCTGGAGAGCGAGATCAAATGGGCTCGCGAGGAGGCCACGCTAGCAACTGCTTTGGAAAACCTAAAAATGGAGCTGGCACAGGAAGAAGACAGGAGAAGGTCCGCAGAAGAAGAGCAGCAGATGTTAGAAAGCGCCCAAGCGAAAATGTTAGCAGAGGAACAGCAGAAACGTGAGCTGGAGTACGCAGAACACCAGAAGAAGATGCAGACGGAGGAGGAGAAGCAGCAGGCGGAGTGGAAGAAGCATCGGCTTcagatggaggaagaggagctgAAGAGGCAGATCACTGAGTCGCAGCACAAACAGTGcatggaggaggagaggaacaACCTGGAGCAGGAGCGACTCCACATGCTGAGAGAGTACACGGAGAAGATGAACGAGCTGCACAAGCAGGAACAGCAGACcaaagaggagaaagaagaatGGCTGAGGAGGAACATCAAGAGAACGTCCTGCTGCAGCATCGCTTAAATCAcaattacagtttaaaaaaagcttcattttaGCTGTAAAGTCTGTAGAACAGGATCATAAATCATTTCAGCCTCAGCACGAGTGTGTCACTGTTAGGAGCCTCTGCTTGTGTAAGAcgagttattatattatatattatattataaatatatatattatatactgtatatatattatattaaagttatatatattataacttTAAACAAAGTAATGAATAAACTCAGCTGAGGTTgctttctgattggttgaggaTGTTCAGCAGCATCATTACACAAAATCCGAGCCGAACTTTTCAAGAGAGCGAAACACACCTGCAGGACAGGAGAAGAAATCTTTCTCACGGATTAAATTCCCAAGTTCTCGACTTAGATTTCACTCCGGTAACTTTTACAGGAAAGAAACATCATGGGATTTACCCGAGAAAAGGGTGATGATCATTTCCACACATAAAGTCAGTAAATTTAACTAAGCATATTTTAATTAAGGTTTCCATGGCACCCAGGATCATTTTACTCAAGTTAAAGAGTCACTAACACACAAAGTAAACAGGACAAACTTCTGCTCCTTTAAGTAAACTACTGACTTCATTCATTTCAACCGAACGTCTGCACTCACAAATCAATGACAAAAACACTGACGTAAGGGAGAGCTACAGTAAAtccaaataacaataataataaattatcaaTATATCTCCTTACTTTCGTTTAAAATTCAATTCAGAgtgctttaaattaaaaaaaaaatgcaatgttaTCAAagagtaaaaattaaataaataatcctgaTTATTTGAGCTGTTAGTGATCTATTCCTTCATTTCTAAAATGATCAAACCGTCAGGTCCAGTTCTACTTTATATTCTCCACGTCCAATTTCTGTTCCAAACACAGAACACAGCGtaaattacagtttatttaagGTCTAAAACGATGCAGTAAACAGCTGGAGCTTTGAGTTAAAGGGTTTAAATTTCCACTAAAACACGTTTAATGAAGTGAAAATGGAAGTGAAAAGATCTTGAGGTGTGTAAAGATTTagttttgattcatttctgCTTCTTCATTCTGCTGTCCTTATTACACTCCTGTacggaacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacaccctcggCTTTCACTTTAATAACATCACCACATTTCTCATTTCCACTTCTCCACATCTGGAAGTGAGAACTTTAAATTCTAGACTTCTTCAAACCTGCACAAAAATCTCTGTAATGttcatctgtctctgtgtctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgttcgggaCACATGAGGGTGACTTCTACACTTTTATGTTTAActttattactgtttctataaattaaaagtaatcCACAATTAATATCAGTATTTTTAACTGTTCTGAGATAAGCTGTGACTCTAAATTCAGTTTGATTCGTACTTTAAAAGGCTGCATGTGATTTTACAGGATCATGTGACTCTTCACCGAGAACCCgacaggaaccctggagctagttttaggggagaaaaaaaacaaaacacgtCCATCTAGCACTCTAAAGGGTTCTCCGGTTCGTCACTCTCAGGAACCCTTTAAAAAGTTCTCTTTAGAACCCTGAGAAGAGTTCCAAAGAGAACCTCTACAGAAAGGGAGGAACTCTCTGAGGAACCCAGCACACAGGTAAAGGTACCTTCATTGTCTCTACAGAGGAACTCCAAAAGCATACACCTTTTACCTGCTAATGGGAACATAACGCACCTTTAAGGAACACAACTGCACCTgaaggacgtgtgtgtgtgtctgtagttaTACTTTAACGGTGCATTAAACGCACCTGTCCAGGTAAAAGACACACAGTACAGGTGCAGAAGGTGCACACTGAGGGTACAGTGCAGTTCAATACCCTTTGTTTCGGAGTGTACTTGTACACCTGCTGTGTTTATATCGCACTCCTGCGCAGAAATGATCTCTAACGCATGAGCTCTCCTTCCTTTACACAgaaataaagctaaataaataaacaaataaacaaataaacccaCGTCCCACACAAATGAGCTGGgatcatatttaaaaagaaactttttaaaGACTGTATGAAAAGAACTATCATCAAATCATGAATAAATCTCACAAATGAGGTCAAACCAACCAAAgaaagtgcgtgtgtgtgtgtgtgtgtgtgtgttctagttaaacagtaaaataactGACTTGAACTGAACATTTCCATGTTATAAAGAGAAGTGATAAACTaaggagaaaataaattaaagtacaCAAACTACACTTTTCCAGAATTTTCCCAGAGAGTTGTATTTCAAGTCCACACTGAGTGAAACACTCAAAGACTTTTCtataaaaactgatttttgAGACATGCAGCAACAAGACAAGATTTTTCTCccaattttattgttttattaaaaaaaaaaaaaaaacaaacaaacgcaGAAAAAATTGAATGTACTTCTAATGGACACAATTTTAGCCAGCTGTAGCCCAGAGCAgtgatgaacacacactgaacctcAACACACTCGGACACTGTTCTTCGTTTACGCTCGTAATAACACTACAGATATTAAACCTAAAGGAGACGTCAGGCCCAGTTTAGTTCTTTATGTTTCTCTAACACTGATTCTCGGAGCTCAGGAGGGGAGAAACACCTCGTTTCTCAGACGTACACGAAGCGGAGTTAAACCGCGACACGTCCGCGCCGAAAACAGCTCAGCGTTAGACTTTATTTCACAGACGATTCGGGTCAGAACGCAGCTCGGTGTTCGCGTGCCCGCGGGAGGCGCTGGGAGAGTCGAGGCTCGTTTTCTAACAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU240438 lncRNA upstream 78655 201950 ~ 202805 (+) False G203081
TU240439 lncRNA upstream 78655 201950 ~ 202805 (+) False G203081
TU240381 lncRNA upstream 105469 175433 ~ 175991 (+) True G203058
TU240383 lncRNA upstream 105469 175433 ~ 175991 (+) False G203058
TU240368 lncRNA upstream 122527 158552 ~ 158933 (+) True G203049
TU240411 lncRNA downstream 51608 338042 ~ 359354 (+) True prl
TU240415 lncRNA downstream 159040 445474 ~ 503897 (+) True G203071
TU240501 lncRNA downstream 223485 509919 ~ 512745 (+) False G203134
TU240503 lncRNA downstream 223485 509919 ~ 512745 (+) True G203134
TU240514 lncRNA downstream 227155 513589 ~ 515888 (+) True G203135
XM_034310145.1 mRNA upstream 11544 266880 ~ 269916 (+) False prl
XM_034310096.1 mRNA upstream 109508 170845 ~ 171952 (+) False LOC117598847
XM_034310097.1 mRNA upstream 109508 170845 ~ 171952 (+) True LOC117598847
XM_026911782.2 mRNA upstream 218054 55561 ~ 63406 (+) True syt5a
XM_026911773.2 mRNA upstream 275678 2041 ~ 5782 (+) True LOC113525294
XM_034309959.1 mRNA downstream 11237 297671 ~ 332191 (+) True ap2a1
XM_034309960.1 mRNA downstream 11238 297672 ~ 332191 (+) False ap2a1
XM_034309961.1 mRNA downstream 11238 297672 ~ 332191 (+) False ap2a1
XM_034309954.1 mRNA downstream 50587 337021 ~ 340158 (+) True si:ch211-195b15.8
XM_034310279.1 mRNA downstream 61288 347722 ~ 356931 (+) True rras
TU240434 other upstream 11640 267579 ~ 269820 (+) False prl
TU240437 other upstream 78655 201950 ~ 202805 (+) True G203081
TU240365 other upstream 118324 156620 ~ 163136 (+) True G203047
TU240364 other upstream 120348 155327 ~ 161112 (+) True G203046
TU240520 other downstream 238378 524812 ~ 527620 (+) False LOC117598976
TU240776 other downstream 385790 672224 ~ 676839 (+) False thoc6
TU240792 other downstream 421340 707774 ~ 710443 (+) False rnf25
TU240780 other downstream 440373 726807 ~ 732854 (+) False si:dkey-16l2.17
TU240808 other downstream 466841 753275 ~ 758058 (+) False fus

Expression Profile