RNA id: TU240438


Basic Information

Item Value
RNA id TU240438
length 472
lncRNA type inter_gene
GC content 0.54
exon number 2
gene id G203081
representative False

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 201950 ~ 202805 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GGGGGGCAGGCAGGGAGGATTATgatataaaaaggaaaaagtataataatgagAAAGATACATACATGAGGTATATAAATGGTGATACACGTGTGAAGGAGACGATTGTGAGAACTgaattgtgtgcatgtgtgagaagACAGAGTGGCGTACGGCGAGGACAGCAGAGGGACATTCAGAGCTGATGACAGTGAGGACGCAGGCGTACGGCGAGGACAGCAGAGGGACATTCAGAGCTGATGACAGTGAGGACGCAGGCGTACGGCGAGGACAGCAGAGGGACATTCAGAGCCGATGACAGTGAGGACGCAGGCGTACGGCGAGGACAGCAGAGGGACATTCAGAGCCGATGACAGTGAGGACGCAGGCGTACGGCGAGGACAGCAGAGGGACATTCAGAGCCGATGACAGTGAGGACGCAGGCGTACGGCGAGGACAGCAGAGGGACATTCAGAGCCGATGACAGTGAGGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU240381 lncRNA upstream 25959 175433 ~ 175991 (+) True G203058
TU240383 lncRNA upstream 25959 175433 ~ 175991 (+) False G203058
TU240368 lncRNA upstream 43017 158552 ~ 158933 (+) True G203049
TU240359 lncRNA upstream 55233 144076 ~ 146717 (+) True G203043
TU240360 lncRNA upstream 55397 144076 ~ 146553 (+) False G203043
TU240466 lncRNA downstream 56386 259191 ~ 307393 (+) True G203108
TU240409 lncRNA downstream 64330 267135 ~ 333626 (+) False prl
TU240425 lncRNA downstream 83200 286005 ~ 338292 (+) False LOC113525016
TU240426 lncRNA downstream 83200 286005 ~ 305086 (+) False LOC113525016
TU240427 lncRNA downstream 83200 286005 ~ 367855 (+) False LOC113525016
XM_034310096.1 mRNA upstream 29998 170845 ~ 171952 (+) False LOC117598847
XM_034310097.1 mRNA upstream 29998 170845 ~ 171952 (+) True LOC117598847
XM_026911782.2 mRNA upstream 138544 55561 ~ 63406 (+) True syt5a
XM_026911773.2 mRNA upstream 196168 2041 ~ 5782 (+) True LOC113525294
XM_034310145.1 mRNA downstream 64075 266880 ~ 269916 (+) False prl
XM_026911433.2 mRNA downstream 78407 281212 ~ 286434 (+) True LOC113525016
XM_034309955.1 mRNA downstream 78655 281460 ~ 286434 (+) False LOC113525016
XM_034309959.1 mRNA downstream 94866 297671 ~ 332191 (+) True ap2a1
XM_034309960.1 mRNA downstream 94867 297672 ~ 332191 (+) False ap2a1
TU240365 other upstream 38814 156620 ~ 163136 (+) True G203047
TU240364 other upstream 40838 155327 ~ 161112 (+) True G203046
TU240434 other downstream 64774 267579 ~ 269820 (+) False prl
TU240520 other downstream 322007 524812 ~ 527620 (+) False LOC117598976
TU240776 other downstream 469419 672224 ~ 676839 (+) False thoc6
TU240792 other downstream 504969 707774 ~ 710443 (+) False rnf25
TU240780 other downstream 524002 726807 ~ 732854 (+) False si:dkey-16l2.17

Expression Profile