RNA id: TU240466


Basic Information

Item Value
RNA id TU240466
length 286
lncRNA type read_through
GC content 0.50
exon number 2
gene id G203108
representative True

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 259191 ~ 307393 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GGAGAGCGagttcacacacagctgcaccAGGACAGAACATGGAAACACTCACCATTTATCCAGATCTGACTTGATGGTCTTGCAGGCGGCTGGGACGCGGCTCTCAGCAGGAACAGTGGTCTCTGAGTCTGACATCTTctaatgctctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgttcttctgagggagagacagagagagatgaatacagagagacagacagagtgcaGGTTAgtaagtaagagtgtgtgtgtgtgtgtgtgtgtgtgtgtca

Function

GO:

id name namespace
GO:0008144 drug binding molecular_function
GO:0019825 oxygen binding molecular_function
GO:0036094 small molecule binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU240438 lncRNA upstream 56386 201950 ~ 202805 (+) False G203081
TU240439 lncRNA upstream 56386 201950 ~ 202805 (+) False G203081
TU240381 lncRNA upstream 83200 175433 ~ 175991 (+) True G203058
TU240383 lncRNA upstream 83200 175433 ~ 175991 (+) False G203058
TU240368 lncRNA upstream 100258 158552 ~ 158933 (+) True G203049
TU240411 lncRNA downstream 30649 338042 ~ 359354 (+) True prl
TU240415 lncRNA downstream 138081 445474 ~ 503897 (+) True G203071
TU240501 lncRNA downstream 202526 509919 ~ 512745 (+) False G203134
TU240503 lncRNA downstream 202526 509919 ~ 512745 (+) True G203134
TU240514 lncRNA downstream 206196 513589 ~ 515888 (+) True G203135
XM_034310096.1 mRNA upstream 87239 170845 ~ 171952 (+) False LOC117598847
XM_034310097.1 mRNA upstream 87239 170845 ~ 171952 (+) True LOC117598847
XM_026911782.2 mRNA upstream 195785 55561 ~ 63406 (+) True syt5a
XM_026911773.2 mRNA upstream 253409 2041 ~ 5782 (+) True LOC113525294
XM_034309954.1 mRNA downstream 29628 337021 ~ 340158 (+) True si:ch211-195b15.8
XM_034310279.1 mRNA downstream 40329 347722 ~ 356931 (+) True rras
XM_026911411.2 mRNA downstream 55984 363377 ~ 369013 (+) True prrg2
XM_026911412.2 mRNA downstream 55985 363378 ~ 369013 (+) False prrg2
XM_034309702.1 mRNA downstream 63173 370566 ~ 404291 (+) True prr12b
TU240437 other upstream 56386 201950 ~ 202805 (+) True G203081
TU240365 other upstream 96055 156620 ~ 163136 (+) True G203047
TU240364 other upstream 98079 155327 ~ 161112 (+) True G203046
TU240520 other downstream 217419 524812 ~ 527620 (+) False LOC117598976
TU240776 other downstream 364831 672224 ~ 676839 (+) False thoc6
TU240792 other downstream 400381 707774 ~ 710443 (+) False rnf25
TU240780 other downstream 419414 726807 ~ 732854 (+) False si:dkey-16l2.17
TU240808 other downstream 445882 753275 ~ 758058 (+) False fus

Expression Profile