RNA id: TU240520


Basic Information

Item Value
RNA id TU240520
length 1416
RNA type TUCP
GC content 0.50
exon number 2
gene id LOC117598976
representative False

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 523113 ~ 529624 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CTTTGACGCCAGAGAAGCAGAATCTGCCAAAACCAAGGAATGTGTTGAGAAGAGTGCGAAGTCTCCTTCAGGCATTTTTCTCCAAGGCATCTAAAGCTCTGAGCTTTCCCACACACGAGGAGAGGGTGGAGGAGAAGGTGGACCTGGACCTGTGCACCAACAGGGTCATTACTGAAGTCATTGATTTGTTAAGGAGTGAGTTGACAGCTCCACCTGCGGTGAAGAACGATGACGCCTATTTCCACACCAAATCCACCAGGCGTGTGAGTGACATCATCTTCCGAATAGTGGAATCCTGTCCTCTGCTGCCCTCACAATTCCCAAAGGAACGCCACACGGAAGCGCATCTCAGGAAAGTGGCGTCCGCGTTAAATCTGCAGGTCGTTTCTACCGCTTCTGAGATTTCCCGAACTGTTAGCTCCACTGTGCAGCAGTTTATAGACGCAGACAGGAAGTCGAGGCCTTCAGTCCAGAGGAGTTCATTCGCTCCTCTGCACCTTTTCACTGTGGTGCGCAACCAGCTGAAGAATTTCTTCACTTCCTTCTCTAAACGTGTTGCTGACGATGAAAGGACAGACGCGTCAGCACAGTCAGAGAGGGATCAGGATCGTGTCACTCCCATCTACATCAGCGAGGATGGAAGTAGGAAAGATTTGTGTTCCAGCACAGAGTCGTCACCAACAGTATCAGTAGATCTTTTTCAAGTCACTGCTGAGATCGTGAACAGGGTGATCAGTGGAATTGCTAGTGAGATCGGACTAATGGAAAATGGATCGGAAGCTCAGATGAGTGATGCTGATGCTCGCTCAGCTTCCTACCCAAAGAACTCTGACGTTTTCGCGAAGCTCCGAAGTCTTATTGGAGTCAGAGATAAAAGCAGACAGTCGTGCTCGTGCCTGAAGaacgcagcagcagcagcagcagtgactgATGCTAAGAGCCTGGTGTCCATCAGCGAAGCTCCAAACCTGCAGGCTGTTATTGACAGCTTCACTGAGGAGCTGATTGCGAAGAACGCAGATTTATTTCTGCGTGACGAGCTGCTGGCCAAGTCCAGCTCTTCTAAAGCGTCTCGGCGCAGACGGTCTGCGTTCTTGCAGCCGCGTAAATCCGATCAGCGGATTGTTTCCGAGGTAAAAAAGACCTGTGAGGTGAGCAGTTCTGTCCCTCTGAGGTCTAATCAGCTTCTCAATAAAGCCACTCAGGTGGTGAGTGAGATGCTGCTCAGAAGGTTGTCAACAGCAGACTCCTCGAGATGCTCGTTAGAAGACGCGCAGAGTGCCGTCAGTACCGCAGATTCGCTCGTCAGGGTTTTATACGAATGTGACGAGTCTGTGAAAGAGAAGACTAAGAGCTCTGACGCTCTCGATGCCTTGTCCTGCTTCTTTGACGTCAGAGAAGCAGAATCTGCCAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU240514 lncRNA upstream 8924 513589 ~ 515888 (+) True G203135
TU240501 lncRNA upstream 12067 509919 ~ 512745 (+) False G203134
TU240503 lncRNA upstream 12067 509919 ~ 512745 (+) True G203134
TU240415 lncRNA upstream 20915 445474 ~ 503897 (+) True G203071
TU240427 lncRNA upstream 156957 286005 ~ 367855 (+) False LOC113525016
TU240522 lncRNA downstream 3767 531387 ~ 531618 (+) True G203141
TU240718 lncRNA downstream 26101 553721 ~ 553946 (+) True G203272
TU240727 lncRNA downstream 58969 586589 ~ 586882 (+) True G203277
TU240735 lncRNA downstream 67558 595178 ~ 598723 (+) True G203281
TU240732 lncRNA downstream 83084 610704 ~ 612555 (+) True G203278
XM_034309750.1 mRNA upstream 17682 496444 ~ 507130 (+) False nosip
XM_034309751.1 mRNA upstream 17682 496812 ~ 507130 (+) True nosip
XM_026911422.2 mRNA upstream 29243 486254 ~ 495569 (+) True LOC113525007
XM_034310147.1 mRNA upstream 43378 457705 ~ 481434 (+) True trpm4a
XM_034309706.1 mRNA upstream 87918 423846 ~ 436894 (+) True scaf1
XM_026911441.2 mRNA downstream 15780 543400 ~ 549365 (+) True pax10
XM_026911409.2 mRNA downstream 27669 555289 ~ 563409 (+) False LOC113524995
XM_026911408.2 mRNA downstream 27672 555292 ~ 563409 (+) True LOC113524995
XM_034309743.1 mRNA downstream 45774 573394 ~ 586456 (+) True bcl2l12
XM_034309742.1 mRNA downstream 45774 573394 ~ 586456 (+) False bcl2l12
TU240433 other upstream 183536 199260 ~ 341276 (+) True G203077
TU240434 other upstream 254992 267579 ~ 269820 (+) False prl
TU240437 other upstream 322007 201950 ~ 202805 (+) True G203081
TU240365 other upstream 361676 156620 ~ 163136 (+) True G203047
TU240364 other upstream 363700 155327 ~ 161112 (+) True G203046
TU240776 other downstream 144604 672224 ~ 676839 (+) False thoc6
TU240792 other downstream 180154 707774 ~ 710443 (+) False rnf25
TU240780 other downstream 199187 726807 ~ 732854 (+) False si:dkey-16l2.17
TU240808 other downstream 225655 753275 ~ 758058 (+) False fus
TU240783 other downstream 519185 1046805 ~ 1051139 (+) False armc5

Expression Profile