RNA id: TU240540


Basic Information

Item Value
RNA id TU240540
length 2075
RNA type TUCP
GC content 0.50
exon number 2
gene id G203154
representative True

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 331541 ~ 333644 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CTCACGCTCTCACCTGCGCtcacacacgctctcacacacgctctcacacacgctctcacacactaAAGATTGAGTGGAGAGAGATGAGAGTTAAAACCTCTGGCCTGTTCTGTGCGTTTGTGTTCTAAACTTCATCCACTAGTGTTCAAAGATAAGTGCTGTTACAGTAATCTGTGTGAAGATGATCGTAATCTCTGTAGCCGTGCGCATTAAACATTTCTCCCTCAGAAGGTAGTGTATAAACTGCAGGCGTGAAGGAGGCTCAGACGCATCCTCAGACCTGATCCCATAATTCTGTGCACCGGGCAGCGGCGGTGCGACACACCGAGCCTCAGCGTAGTTTAGTGTCTGTACATCGCAGCACGGGGCGTTAATACGAGCGCGGGTCTGACTGTGGCAGTGTGTGAGGAGCGAGTGACGGAGATACgactctctctcctgttcttCAGTCACTGCAGCACAGACCAACAGAAAACATCTTCGTTTTCATTACGTGTAAGACAGAAGCTCACTTCTCTCGCTGAGTCTCTCCTACACCTCCACGCCTGTAcgctacacattacacatttaatGGAATGCCTGAAACAGATACGTCGAAAACACAACTATCAAAACTAAGAAAAACACGGAAACACAACCAACAGCGGGCGatcatgtttacatttatatttttacatacataatTACTTCATTAATCACGGTTATAATCATGTACGGAATCGTGAGAAGTTAGCCGGATCAGGGACGGGTCTGCAGACGCCTCGTTTCTCTCCAGGCCTGTAAAGTGCACTGGCCTGCACTCGGTTTCAGGGAATGTGGGGGTCACggtaacaacacaacacaacacactcagaACCCCACGTACGTCCCACTGAGTGCCATCGGCTCCGGAGAGAAGAGGCAGCGAGAGGAGAGACTTAGTGACGCATTTACTCAGGAAGTGCCGCTTCTTTAGTGTATTCagactgcagtgtttatttctcCCAGAGACTCTGCTCAACTAGTCAACATGGAATGTCCCAACAAAACTGTGCATGTGCGGCTGgacgagcgtgtgtgtgtgtgtgtgtgagtgtgagtgtatttgtgagtgtgtgtgtgtcctaacaatATGTCTCAGGAATGTTTACAGGTTGAAATGTtgcagatcacacacacacagtcacacacacacacacacacacacacacacacacacacacacacacacacagagagaaagagagagaaaatgttaaaaatctcTCCATCGCTCTCTCTATTGGTCgctctctttccttcctttcgcTCGGTACGACACACACCAGCTGTCAACACAAGCACAGGTTAACAAGCAGGACAGAACattcagcgcacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacactcacgcactcactcacactcactcacctcactcactcacacacgctcactcactcactcactcactcacgcacACGCAGGTAAACACCGATTAAAAACAGGAACGGTAgcgctgatgatgatgatgatgatatacaataataatcagGATGAGGACAGTAATCATGGCCGTCGTGGACAGGCAGTTGCTTTTCCCTTATGGATGAACGGAGAACGTTCcgggGTGGAGGAGAAGGTGGAGGAGGGGGCGGGACGCTGGTCTGCTCTGGCTCTAGAACGTGATGGTCTGCGCGCTGGTTCTAGAAGCCGTGGTCTAGAACTGTTCTGCCAGCAACTCGCACAGACGCTTAGCGACGGTGTCCTTACTGCTGCGCACAGTCAGCCGGTACatctgaggaacacacacacacacacacacacacacacacacacacacacacacagagaggaacagaggttacagagagacacacacacgcaccaaaCACGGAATAAACACTCAAAACACCTCCATTAACTGCAGTATGGCCCAAATGGTGTCGGTGTAACGCGAGCGAACGCCGCACTCTGTCCCGTCAATCAGAGATTTAGAAAATCAAACAGCTGCAGCCAATCGCAGCATCCCGCCTCCGAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU240582 lncRNA downstream 9353 321410 ~ 322188 (-) True G203189
TU240553 lncRNA downstream 22613 303191 ~ 308928 (-) True G203167
TU240534 lncRNA downstream 72061 252070 ~ 259480 (-) True LOC113525022
XR_004579345.1 lncRNA downstream 72100 252593 ~ 259441 (-) False LOC113525022
TU240567 lncRNA downstream 144520 184940 ~ 187021 (-) True G203174
TU240542 lncRNA upstream 57 333701 ~ 334660 (-) True G203156
TU240541 lncRNA upstream 13881 347525 ~ 348129 (-) True G203155
TU240583 lncRNA upstream 14941 348585 ~ 371473 (-) True G203190
TU240543 lncRNA upstream 22589 356233 ~ 359381 (-) True G203157
TU240674 lncRNA upstream 152665 486309 ~ 489731 (-) False G203254
XM_034309956.1 mRNA downstream 38929 288206 ~ 292612 (-) False prmt1
XM_034309957.1 mRNA downstream 38930 286041 ~ 292611 (-) True prmt1
XM_034310104.1 mRNA downstream 80969 203871 ~ 250572 (-) True si:dkey-16p21.7
XM_034310105.1 mRNA downstream 80972 203871 ~ 250569 (-) False si:dkey-16p21.7
XM_034310144.1 mRNA downstream 131149 144168 ~ 200392 (-) True cpt1cb
XM_034310146.1 mRNA upstream 72282 405926 ~ 416575 (-) True si:ch211-195b15.7
XM_034309749.1 mRNA upstream 173726 507370 ~ 515804 (-) False rcn3
XM_026911421.2 mRNA upstream 178717 512361 ~ 516950 (-) True rcn3
XM_034309748.1 mRNA upstream 178717 512361 ~ 516608 (-) False rcn3
XM_034310149.1 mRNA upstream 277546 611190 ~ 614186 (-) True LOC113525013
TU240560 other downstream 168957 162126 ~ 162584 (-) True G203170
TU240319 other downstream 277266 37599 ~ 54275 (-) False aldh16a1
TU240668 other upstream 152578 486222 ~ 489731 (-) False G203254
TU240992 other upstream 407600 741244 ~ 750799 (-) True G203488
TU240994 other upstream 407753 741397 ~ 743393 (-) False LOC117598978
TU240991 other upstream 409049 742693 ~ 749361 (-) False G203488
TU241063 other upstream 576473 910117 ~ 911228 (-) True G203544

Expression Profile