RNA id: TU240541


Basic Information

Item Value
RNA id TU240541
length 424
lncRNA type inter_gene
GC content 0.43
exon number 2
gene id G203155
representative True

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 347525 ~ 348129 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

aaatctataaaatcgtgtataaagggagaaaaaatgaagaagaaaaaggtgTTACCCTTCTTTCCGCCGCTGCCGCCGCCGCCTTGAGTAAATTAGCCTGATTAGCTTCTGCCAAAGTTCGCGAGTGGAAAAGTCAAAGTGTTAAAAGTTAAAGTGAGGAAGCAAACAGGAGACAGTGAGAGCAGATTAACTTCCTTAAAAAGCCGCTGAATTTTATCCACAGATCACAAACAGAGGCGCACAAACCCGCAAATCATGTTTAAAACCGGAAAGAAATAAAGTTCCGGAGATTTCAGGAATGTGTtctggattttttcccccctgggTGATTTCTGCTCAGtggaatctctctctctctctctgtttctctctctctctctctctctctctgtttctctctctctctctctctctctctctgttt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU240544 lncRNA downstream 6239 302577 ~ 341286 (-) True G203158
TU240542 lncRNA downstream 12865 333701 ~ 334660 (-) True G203156
TU240582 lncRNA downstream 25337 321410 ~ 322188 (-) True G203189
TU240553 lncRNA downstream 38597 303191 ~ 308928 (-) True G203167
TU240534 lncRNA downstream 88045 252070 ~ 259480 (-) True LOC113525022
TU240583 lncRNA upstream 456 348585 ~ 371473 (-) True G203190
TU240543 lncRNA upstream 8104 356233 ~ 359381 (-) True G203157
TU240674 lncRNA upstream 138180 486309 ~ 489731 (-) False G203254
TU240677 lncRNA upstream 138180 486309 ~ 489731 (-) True G203254
TU240706 lncRNA upstream 157187 505316 ~ 505912 (-) True G203261
XM_034309956.1 mRNA downstream 54913 288206 ~ 292612 (-) False prmt1
XM_034309957.1 mRNA downstream 54914 286041 ~ 292611 (-) True prmt1
XM_034310104.1 mRNA downstream 96953 203871 ~ 250572 (-) True si:dkey-16p21.7
XM_034310105.1 mRNA downstream 96956 203871 ~ 250569 (-) False si:dkey-16p21.7
XM_034310144.1 mRNA downstream 147133 144168 ~ 200392 (-) True cpt1cb
XM_034310146.1 mRNA upstream 57797 405926 ~ 416575 (-) True si:ch211-195b15.7
XM_034309749.1 mRNA upstream 159241 507370 ~ 515804 (-) False rcn3
XM_026911421.2 mRNA upstream 164232 512361 ~ 516950 (-) True rcn3
XM_034309748.1 mRNA upstream 164232 512361 ~ 516608 (-) False rcn3
XM_034310149.1 mRNA upstream 263061 611190 ~ 614186 (-) True LOC113525013
TU240540 other downstream 13881 331541 ~ 333644 (-) True G203154
TU240560 other downstream 184941 162126 ~ 162584 (-) True G203170
TU240319 other downstream 293250 37599 ~ 54275 (-) False aldh16a1
TU240668 other upstream 138093 486222 ~ 489731 (-) False G203254
TU240992 other upstream 393115 741244 ~ 750799 (-) True G203488
TU240994 other upstream 393268 741397 ~ 743393 (-) False LOC117598978
TU240991 other upstream 394564 742693 ~ 749361 (-) False G203488
TU241063 other upstream 561988 910117 ~ 911228 (-) True G203544

Expression Profile