RNA id: TU240550


Basic Information

Item Value
RNA id TU240550
length 338
lncRNA type intronic
GC content 0.41
exon number 1
gene id G203164
representative True

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 179034 ~ 179371 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

caggaacaccgaaagaccatggaaaacaactgtggtggatgacaggAGAactctttccctggtgaagaaaaactttttCACAATAGTTTGCCAGATGAAGAACATCCTCCAGGAGGTCAGCATATCTGTGTCacagtcaacaatcaagagaagccttcaccagagtaaatacagagacTTTACCACGAGATGTACACCAGAACctcagaaacagaaagaccagattagagttttacaaaaacatttttataaatccTGTACAGTTCTGAAGCAACATCCTACTGAGAGATGAGATGAAGATGAACTTGTAGCAGAATgaagggaagagaagaatatgg

Function

GO: NA

KEGG:

id description
ko05322 Systemic lupus erythematosus
ko05034 Alcoholism

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU240566 lncRNA downstream 3042 175518 ~ 175992 (-) False G203173
TU240563 lncRNA downstream 3042 175626 ~ 175992 (-) True G203173
TU240564 lncRNA downstream 3042 175626 ~ 175992 (-) False G203173
TU240565 lncRNA downstream 3042 175626 ~ 175992 (-) False G203173
TU240556 lncRNA downstream 18874 157878 ~ 160160 (-) True G203169
TU240567 lncRNA upstream 5569 184940 ~ 187021 (-) True G203174
TU240534 lncRNA upstream 72699 252070 ~ 259480 (-) True LOC113525022
XR_004579345.1 lncRNA upstream 73222 252593 ~ 259441 (-) False LOC113525022
TU240538 lncRNA upstream 118022 297393 ~ 371373 (-) True G203152
TU240544 lncRNA upstream 123206 302577 ~ 341286 (-) True G203158
XM_034310095.1 mRNA downstream 39196 116874 ~ 139838 (-) False LOC113525295
XM_026911774.2 mRNA downstream 39197 116874 ~ 139837 (-) True LOC113525295
XM_034310143.1 mRNA downstream 75921 80628 ~ 103113 (-) True pih1d1
XM_026911781.2 mRNA downstream 100070 65197 ~ 78964 (-) False tnnt1
XM_026911780.2 mRNA downstream 100072 65197 ~ 78962 (-) True tnnt1
XM_034310104.1 mRNA upstream 24500 203871 ~ 250572 (-) True si:dkey-16p21.7
XM_034310105.1 mRNA upstream 24500 203871 ~ 250569 (-) False si:dkey-16p21.7
XM_034309957.1 mRNA upstream 106670 286041 ~ 292611 (-) True prmt1
XM_034309956.1 mRNA upstream 108835 288206 ~ 292612 (-) False prmt1
XM_034310146.1 mRNA upstream 226555 405926 ~ 416575 (-) True si:ch211-195b15.7
TU240560 other downstream 16450 162126 ~ 162584 (-) True G203170
TU240319 other downstream 124759 37599 ~ 54275 (-) False aldh16a1
TU240540 other upstream 152170 331541 ~ 333644 (-) True G203154
TU240668 other upstream 306851 486222 ~ 489731 (-) False G203254
TU240992 other upstream 561873 741244 ~ 750799 (-) True G203488
TU240994 other upstream 562026 741397 ~ 743393 (-) False LOC117598978
TU240991 other upstream 563322 742693 ~ 749361 (-) False G203488

Expression Profile