RNA id: TU240706


Basic Information

Item Value
RNA id TU240706
length 414
lncRNA type inter_gene
GC content 0.50
exon number 2
gene id G203261
representative True

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 505316 ~ 505912 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

tctcacacacacacacacactctctctctcacacacacacacacactctctctctcacacacacacacacacacactctctctcacacacacacacacacacacacacacacactctctctcacacacacacacactcctctcacacacacacacactctctcacacacacacacactctctcacacacacacacactctctcacacacacacacacactctctccacacacacacactctcacacacacacacacacacacgtacccgCTGCAGGACTATTATGTCTTTCTCCTTCAGTTTGTCTCCAGACACCGGGTCTATCATATCTTTACGTATGAGCTTCTCTACACACTCCAGAGTGACCACTActcctctgagagagagagagagagagagagagagagagagagag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU240674 lncRNA downstream 15585 486309 ~ 489731 (-) False G203254
TU240677 lncRNA downstream 15585 486309 ~ 489731 (-) True G203254
TU240583 lncRNA downstream 133843 348585 ~ 371473 (-) True G203190
TU240543 lncRNA downstream 145935 356233 ~ 359381 (-) True G203157
TU240541 lncRNA downstream 157187 347525 ~ 348129 (-) True G203155
TU240714 lncRNA upstream 27380 533292 ~ 533583 (-) True G203268
TU240717 lncRNA upstream 43551 549463 ~ 549711 (-) True G203271
XR_004579336.1 lncRNA upstream 45492 551404 ~ 566798 (-) True LOC117598763
TU240908 lncRNA upstream 159626 665538 ~ 669489 (-) True G203425
TU240973 lncRNA upstream 187587 693499 ~ 693886 (-) True G203471
XM_034310146.1 mRNA downstream 88741 405926 ~ 416575 (-) True si:ch211-195b15.7
XM_034309956.1 mRNA downstream 212704 288206 ~ 292612 (-) False prmt1
XM_034309957.1 mRNA downstream 212705 286041 ~ 292611 (-) True prmt1
XM_034310104.1 mRNA downstream 254744 203871 ~ 250572 (-) True si:dkey-16p21.7
XM_034309749.1 mRNA upstream 1458 507370 ~ 515804 (-) False rcn3
XM_026911421.2 mRNA upstream 6449 512361 ~ 516950 (-) True rcn3
XM_034309748.1 mRNA upstream 6449 512361 ~ 516608 (-) False rcn3
XM_034310149.1 mRNA upstream 105278 611190 ~ 614186 (-) True LOC113525013
XM_026911406.2 mRNA upstream 116433 622345 ~ 630711 (-) True tspan4b
TU240668 other downstream 15585 486222 ~ 489731 (-) False G203254
TU240540 other downstream 171672 331541 ~ 333644 (-) True G203154
TU240560 other downstream 342732 162126 ~ 162584 (-) True G203170
TU240319 other downstream 451041 37599 ~ 54275 (-) False aldh16a1
TU240992 other upstream 235332 741244 ~ 750799 (-) True G203488
TU240994 other upstream 235485 741397 ~ 743393 (-) False LOC117598978
TU240991 other upstream 236781 742693 ~ 749361 (-) False G203488
TU241063 other upstream 404205 910117 ~ 911228 (-) True G203544
TU241084 other upstream 538825 1044737 ~ 1046555 (-) False si:dkey-66i24.7

Expression Profile