RNA id: XM_034309754.1



Basic Information


Item Value
RNA id XM_034309754.1
length 1058
RNA type mRNA
GC content 0.51
exon number 6
gene id si:dkey-16l2.17
representative True

Chromosome Information


Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 726729 ~ 732890 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence


gctgttggagACAGGTGCAGCCACCCAGGTGCCATACAGGAATCTCTGCTGTCCGCATCgcgcctgttttttttcctctcgtgCTGTTAACTTTcttattaaaactttattactgttttgGATGGAATTATATgtgatttatattatattagtccAAAGGAATGAACAAACTGTCGACTAGACAACAAACTCTGAGGAATTTGAATGTTTAGTTTAAACGCGCGTGAGGAGAAAGGAAttcaaatttttattcatttttaatccgCGTGCGTTTCAATCAATAACGGAATTAACGGTCGCTCTGGATTAGCTTCATGCTACACATCATCAGAATGAGGAATTTTGGGATGGAGCTGCTCCTCATGATGCTCACCTCAGGTGTGTGGCTCATCCCAACATGTGACGCTCAAGAATGCGGAAGGCCTCTTGTGGGAACTCGGATCGTAGGAGGCAGTGAGGCGCGAGACGGGGCGTGGCCGTGGCAAGTGGACATCCAGATGGGAACAAGCGGCCATGTCTGTGGAGGATCCATCATCTCCAGTGACTGGGTTCTGTCTGCGGCACACTGTTTTCCCAACCCATCAGATGTGTCCTCATACCATCTCTACATGGGTCGCTATCAGCTCGACGGCACTAACCAGTTTGAGACGTCGAGAGAAGTGAAGAGGGTGGTGGTGGCACACGGGTACTCGACCCCTCAGGAGGGCAGAGACGTGGCACTCGTAGAGCTGAGCTCGCCGCTCGCCTGGACGTCCCACATCCAGCCCGTGTGTCTTCCCAACGCCGACTTCCAGTTCTACGCTGGAACCATGTGCTACGTCACAGGCTGGGGGGACACACAGGAGGGAGTCTCGCTGTCTGGAGTCGGGACGCTACGGGAAGTCGGAGTGCCCATTATTGACCAAGATTCCTGCAACTCCATGTACCAGATGGACTCGTATAACTTGGACAAGGTGTCCATCCTGTCAGACATGATCTGTGCTGGATACCAGGAGGGGGGCAAGGACTCGTGTCAGGTAGCAACCACAAACACTCACCTCTAAACACCTGCACTAAAG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU240757 lncRNA upstream 3037 684623 ~ 723692 (+) False thoc6
TU240779 lncRNA upstream 37079 680901 ~ 689650 (+) False thoc6
TU240788 lncRNA upstream 40099 679778 ~ 686630 (+) True G203328
TU240767 lncRNA upstream 56980 666824 ~ 669749 (+) False thoc6
TU240766 lncRNA upstream 74545 650051 ~ 652184 (+) False unc119.2
TU240781 lncRNA downstream 5449 738339 ~ 738727 (+) True G203321
TU240804 lncRNA downstream 8942 741832 ~ 743740 (+) True G203339
TU240807 lncRNA downstream 38881 771771 ~ 774024 (+) False fus
TU240820 lncRNA downstream 72310 805200 ~ 806345 (+) False setd1a
TU240822 lncRNA downstream 72310 805200 ~ 805855 (+) False setd1a
XM_034309733.1 mRNA upstream 444 717617 ~ 726285 (+) True kat8
XM_034310156.1 mRNA upstream 9710 707738 ~ 717019 (+) True rnf25
XM_034309755.1 mRNA upstream 21276 690189 ~ 705453 (+) True si:dkey-16l2.16
XM_034310155.1 mRNA upstream 37312 666808 ~ 689417 (+) True thoc6
XM_026911435.2 mRNA upstream 60382 653037 ~ 666347 (+) True srrm2
XM_034309721.1 mRNA downstream 20177 753067 ~ 774250 (+) True fus
XM_034309705.1 mRNA downstream 45950 778840 ~ 806153 (+) False setd1a
XM_034309704.1 mRNA downstream 46023 778913 ~ 806153 (+) False setd1a
XM_034309703.1 mRNA downstream 46053 778943 ~ 806153 (+) True setd1a
XM_034309744.1 mRNA downstream 79136 812026 ~ 849880 (+) False hsd3b7
TU240792 other upstream 16286 707774 ~ 710443 (+) False rnf25
TU240776 other upstream 49890 672224 ~ 676839 (+) False thoc6
TU240520 other upstream 199109 524812 ~ 527620 (+) False LOC117598976
TU240434 other upstream 456909 267579 ~ 269820 (+) False prl
TU240437 other upstream 523924 201950 ~ 202805 (+) True G203081
TU240808 other downstream 20385 753275 ~ 758058 (+) False fus
TU240783 other downstream 313915 1046805 ~ 1051139 (+) False armc5
TU240880 other downstream 487622 1220512 ~ 1236612 (+) False paqr4a
TU241205 other downstream 620444 1353334 ~ 1356327 (+) False kmt5c
TU241220 other downstream 828704 1561594 ~ 1591075 (+) False syt3

Expression Profile