RNA id: TU240787


Basic Information

Item Value
RNA id TU240787
length 1709
lncRNA type inter_gene
GC content 0.40
exon number 2
gene id G203327
representative True

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 1058679 ~ 1060521 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

aAAGACATTAAACCAGCTTGTTGTGTCCCTTTTGGTGGTCCATACACTCGCAGATTAATGAATGTGGCCTCTCACATTTAtcgttttaatttgtttttttgtgtaaatctATTTTTGAAAAAGATCTACAAAAttcttataaaaatatttcacattactCTTGCTTTCCTTATTTAAAAActctgttaaaaatgtaaattattttcagTACACTACACCACAAGTACAGATATTAATATACAAAAGGACAGTGTACACATTCAGTATTTTTAGGACCTGTttgttatgttaaaaaaaaaaagtgcaaatcaGATAAATAATGTTGAAATTCTGCGCAAAAGAAGACGTTTATTACTCGGTTTATATTTGTAAACAGACTGTTTTGTTGAATAAATTACTATTTTGAGCATGTACACTTATCCGTTGGAGTTTAGTGTGTGAGGTTTGCTTGTTTAGCTCTTTAGATGTGTAATGTTGCTGATAATTAGTGGAAACCTGCGGCTACTGCTTTAACATCCTCCACCAAAACACACTTACTGAACAGAACTTAATGTTTTAATAGCAAAGTGTGTGAGGGAAGTGAAGCATAGGCAGAGAGGTAAAGACAAGAGAGGTAAAGAGATTAAGAAAAGAGTGCACCTCCTCCCTCGTGGCCTCCGTGCGATGCAGCGGCGAGGACGCGGCGAGCCACCGCAGACGACGCAGACGCAGCCATTCCCTCTGCAGAGCACACCATAAACTCATCTACAGTGCATTATCACTGCTGCGTTTACTGAGCAGATTAAACACTCCTCACATCAGAGCCGTAAAAAGAGGCTCGTTAATCTCCTTACTGTGGAATTAAAcatgaACACTAAATACATTTGACATTTGAAGCATGTACACTATACGattaaaagtatgtgcacccctgaccatcacacccatatgtgcttcttctccaaacacacacttgtatagaacgtctctgtgtgctgtagcattacagtttcccttcactggaactaagaggctcaaacctgttccagcatgacgatgcccctgtgcacaaagcgagctccatgaagacatggtgtgtgaaggttggagtagaagaactcgagtgtcctgcacagagccctgacctcaaccccactgaacacctttgggatgaactggaacaccgactgaaccccagacctcctcgacatcccaacatcagcacctgacctcactaatgctcttgtagctgaatgaacacaaatccccacagccacgctccaacatctagtggaaagacttcgcagaagagtggagcttattataacagcaaacacacgggaataaatctggaatgggacgttcaacaagcacaaatgggtgagatggtcaggggtgcacatacttttggtcatatagtgtacatttactgcatatatacagttctgtgcaaaagtcttaggcacatgcaaagaaaagaaatactgtagagcaaagacgccttcaaaaataatgaaattaaatgattctacatttaaataaatcctataaagagcagtaaacagtaataaatgaaacaaagtcagtatttaatgtgacgatccttcactttaaataaataaagcagtatctgaggtgcagtgtgtgcagttttataaggaaatgagctggaagtgttactgagcatcttgcagaagcagccacagttcttctggagactttgactgtcg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU240833 lncRNA upstream 174313 817391 ~ 884366 (+) True G203357
TU240820 lncRNA upstream 252334 805200 ~ 806345 (+) False setd1a
TU240822 lncRNA upstream 252824 805200 ~ 805855 (+) False setd1a
TU240807 lncRNA upstream 284655 771771 ~ 774024 (+) False fus
TU240804 lncRNA upstream 314939 741832 ~ 743740 (+) True G203339
XR_004579335.1 lncRNA downstream 669 1061190 ~ 1078426 (+) True LOC117598762
TU240861 lncRNA downstream 50008 1110529 ~ 1110847 (+) True G203385
TU241190 lncRNA downstream 248876 1309397 ~ 1312989 (+) True G203635
TU241208 lncRNA downstream 301862 1362383 ~ 1441015 (+) True G203647
TU241222 lncRNA downstream 386468 1446989 ~ 1500793 (+) True G203660
XM_034309708.1 mRNA upstream 2345 1034336 ~ 1056334 (+) False armc5
XM_034309707.1 mRNA upstream 2345 1046811 ~ 1056334 (+) True armc5
XM_026916384.2 mRNA upstream 16229 1037151 ~ 1042450 (+) False LOC113528077
XM_026916385.2 mRNA upstream 16229 1037151 ~ 1042450 (+) False LOC113528077
XM_034309736.1 mRNA upstream 16229 1037151 ~ 1042450 (+) False LOC113528077
XM_034309722.1 mRNA downstream 17918 1078439 ~ 1110138 (+) True LOC113528076
XM_034309725.1 mRNA downstream 17918 1078439 ~ 1110138 (+) False LOC113528076
XM_034309724.1 mRNA downstream 17918 1078439 ~ 1110138 (+) False LOC113528076
XM_034309723.1 mRNA downstream 17918 1078439 ~ 1110138 (+) False LOC113528076
XM_026916380.2 mRNA downstream 17918 1078439 ~ 1110138 (+) False LOC113528076
TU240783 other upstream 7540 1046805 ~ 1051139 (+) False armc5
TU240808 other upstream 300621 753275 ~ 758058 (+) False fus
TU240780 other upstream 325825 726807 ~ 732854 (+) False si:dkey-16l2.17
TU240792 other upstream 348236 707774 ~ 710443 (+) False rnf25
TU240776 other upstream 381840 672224 ~ 676839 (+) False thoc6
TU240880 other downstream 159991 1220512 ~ 1236612 (+) False paqr4a
TU241205 other downstream 292813 1353334 ~ 1356327 (+) False kmt5c
TU241220 other downstream 501073 1561594 ~ 1591075 (+) False syt3
TU241504 other downstream 822554 1883075 ~ 1885478 (+) False ccndx
XR_004579364.1 other downstream 1095078 2155599 ~ 2155849 (+) True LOC117598829

Expression Profile