RNA id: TU240788


Basic Information

Item Value
RNA id TU240788
length 450
lncRNA type sense_over
GC content 0.42
exon number 2
gene id G203328
representative True

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 679778 ~ 686630 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

gttttaatatgtgtttctctctgaaaggtcacatgaccagatgCTGATCTTGTGCAACGTGAGACACTTCGGAAGTCGATATCAGTTTAAATATGACGTCGTTAATCGTATTTTCTCTGCTGCAAACACGTACGTAGACAAACTATCACGTGTGAGACGATGCAGCGTCTCTGAGAGCTGTAAGATAAAAGCTACGCGCGCGATCAGATAAAAAAATCCGACGTGTAAAGCAGCAAAGCCGGACAGTCCTGAGCGCGGTGAAGATAACGACTTCTCTTCTGCAACGTTCTGCTTCAGTTCCTGTGAAAAAACCAACATGGCGATACGCTGagtactgaaaataaataaataaatcaatcatatAATGTGAATTAATGTAATGAGTTTATGTTAGACGTctcggagtgttttattcctcttacaccgcaGCCTGTCGCCAACGGATACCgc

Function

GO: NA

KEGG:

id description
ko00310 Lysine degradation

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU240767 lncRNA upstream 10029 666824 ~ 669749 (+) False thoc6
TU240766 lncRNA upstream 27594 650051 ~ 652184 (+) False unc119.2
TU240758 lncRNA upstream 48196 631290 ~ 631582 (+) True G203303
TU240750 lncRNA upstream 55158 623115 ~ 624620 (+) True G203296
TU240732 lncRNA upstream 67223 610704 ~ 612555 (+) True G203278
TU240781 lncRNA downstream 51709 738339 ~ 738727 (+) True G203321
TU240804 lncRNA downstream 55202 741832 ~ 743740 (+) True G203339
TU240807 lncRNA downstream 85141 771771 ~ 774024 (+) False fus
TU240820 lncRNA downstream 118570 805200 ~ 806345 (+) False setd1a
TU240822 lncRNA downstream 118570 805200 ~ 805855 (+) False setd1a
XM_026911435.2 mRNA upstream 13431 653037 ~ 666347 (+) True srrm2
XM_034310150.1 mRNA upstream 27528 649444 ~ 652250 (+) True unc119.2
XM_034309742.1 mRNA upstream 93322 573394 ~ 586456 (+) False bcl2l12
XM_034309755.1 mRNA downstream 3559 690189 ~ 705453 (+) True si:dkey-16l2.16
XM_034310156.1 mRNA downstream 21108 707738 ~ 717019 (+) True rnf25
XM_034309733.1 mRNA downstream 30987 717617 ~ 726285 (+) True kat8
XM_034309754.1 mRNA downstream 40099 726729 ~ 732890 (+) True si:dkey-16l2.17
XM_034309721.1 mRNA downstream 66437 753067 ~ 774250 (+) True fus
TU240776 other upstream 2939 672224 ~ 676839 (+) False thoc6
TU240520 other upstream 152158 524812 ~ 527620 (+) False LOC117598976
TU240433 other upstream 338502 199260 ~ 341276 (+) True G203077
TU240434 other upstream 409958 267579 ~ 269820 (+) False prl
TU240437 other upstream 476973 201950 ~ 202805 (+) True G203081
TU240792 other downstream 21144 707774 ~ 710443 (+) False rnf25
TU240780 other downstream 40177 726807 ~ 732854 (+) False si:dkey-16l2.17
TU240808 other downstream 66645 753275 ~ 758058 (+) False fus
TU240783 other downstream 360175 1046805 ~ 1051139 (+) False armc5
TU240880 other downstream 533882 1220512 ~ 1236612 (+) False paqr4a

Expression Profile