RNA id: TU240804


Basic Information

Item Value
RNA id TU240804
length 526
lncRNA type inter_gene
GC content 0.51
exon number 2
gene id G203339
representative True

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 741832 ~ 743740 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CTCGAGGAGTCTGCTGTTGACAACCTTCTGAGCAGCATCTCACTCACCACCTGAGTGGCTTTATTGAGAAGCTGATTAGACCTCAGAGGGACAGAACTGCTCACCTCACAGGTCTTTTTTACCTCGGAAACAATCCGCTGATCGGATTTACGCGGCTGCAAGAATGCAGACCGTCTGCGCCGAGAGGCTTTAGAAGAGCTGGACTTGGCCAGCAGCTCGTCACGCAGAAATAAATCTGCGTTCTTCGCAATAAGCTCCTCAGTGAAGCTGTCAATAACAGCCTGCAGGTTTGGAGCTTCGCTGATGGACACGAGGCTCTTAGCATcagtcactgctgctgctgctgcgttCTTCAGGCACGAGCACGACTGTCTGCTTTTATCTCTGACTCCAATAAGACTTCGGAGCTTCGCGAAAACGTCAGAGTTCTTTGGGTAGGAAGCTGAGCGAGCATCAGCATCACTCATCTGAGCTTCCGATCCATTTTCCATTATTCCGATCTCACTAGCAATTCCACTGATCACCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU240781 lncRNA upstream 3105 738339 ~ 738727 (+) True G203321
TU240757 lncRNA upstream 18140 684623 ~ 723692 (+) False thoc6
TU240779 lncRNA upstream 52182 680901 ~ 689650 (+) False thoc6
TU240788 lncRNA upstream 55202 679778 ~ 686630 (+) True G203328
TU240767 lncRNA upstream 72083 666824 ~ 669749 (+) False thoc6
TU240807 lncRNA downstream 28031 771771 ~ 774024 (+) False fus
TU240820 lncRNA downstream 61460 805200 ~ 806345 (+) False setd1a
TU240822 lncRNA downstream 61460 805200 ~ 805855 (+) False setd1a
TU240833 lncRNA downstream 73651 817391 ~ 884366 (+) True G203357
TU240787 lncRNA downstream 314939 1058679 ~ 1060521 (+) True G203327
XM_034309754.1 mRNA upstream 8942 726729 ~ 732890 (+) True si:dkey-16l2.17
XM_034309733.1 mRNA upstream 15547 717617 ~ 726285 (+) True kat8
XM_034310156.1 mRNA upstream 24813 707738 ~ 717019 (+) True rnf25
XM_034309755.1 mRNA upstream 36379 690189 ~ 705453 (+) True si:dkey-16l2.16
XM_034310155.1 mRNA upstream 52415 666808 ~ 689417 (+) True thoc6
XM_034309721.1 mRNA downstream 9327 753067 ~ 774250 (+) True fus
XM_034309705.1 mRNA downstream 35100 778840 ~ 806153 (+) False setd1a
XM_034309704.1 mRNA downstream 35173 778913 ~ 806153 (+) False setd1a
XM_034309703.1 mRNA downstream 35203 778943 ~ 806153 (+) True setd1a
XM_034309744.1 mRNA downstream 68286 812026 ~ 849880 (+) False hsd3b7
TU240780 other upstream 8978 726807 ~ 732854 (+) False si:dkey-16l2.17
TU240792 other upstream 31389 707774 ~ 710443 (+) False rnf25
TU240776 other upstream 64993 672224 ~ 676839 (+) False thoc6
TU240520 other upstream 214212 524812 ~ 527620 (+) False LOC117598976
TU240434 other upstream 472012 267579 ~ 269820 (+) False prl
TU240808 other downstream 9535 753275 ~ 758058 (+) False fus
TU240783 other downstream 303065 1046805 ~ 1051139 (+) False armc5
TU240880 other downstream 476772 1220512 ~ 1236612 (+) False paqr4a
TU241205 other downstream 609594 1353334 ~ 1356327 (+) False kmt5c
TU241220 other downstream 817854 1561594 ~ 1591075 (+) False syt3

Expression Profile