RNA id: TU240807


Basic Information

Item Value
RNA id TU240807
length 787
lncRNA type sense_over
GC content 0.53
exon number 2
gene id fus
representative False

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 753067 ~ 774250 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GCGGTGGGTTCCGCGCTCGCGGAGGAGGAGACCGAGGCGGATTCAGAGGAGGCAGAGGAGGAGACCGAGGAGGATACGGCGCCGGCAAGATGGACTCACGGAGTGATCACAGGCAGGAGCGGAGAGAGCGGCCGTACTGATCCGTTCAGACTCTAAACCGGGACCAGAGTCGCGTTTCTCACCGGGTTAAAGCGTTCGTTTCTCCTGAGGACGCGACTCTCTGACACCTGGACTGTTCCTAATCGCATACTCTATACCCTTTTCCTGTCACATGACACGACCAAAGCTTTGGAGACGAGTCTAATCCCGTCTGATGAAGACTTTATACTCGGACTTTCTTTCTTACGTTAAACACGAGATTCCCGTTTTGCGTTTGAACTCTGGGGTTCATCAGTAGAACATGTTACTGTGTTGTGCATCATTTCGAAGCTTTATTTCCTCTCTGACGCGTGCGATTGGTTTTCTCTCCTCTGCGTGTTTATCCGTTTAACGTAACAGTCATTTGAAAAGTGTTGGACATTTACGGTTCAGTCGCGGCGTTTGTGAGACGTCGGTTCCTCGGTGCGGCGATACGAGACGTCAGAGAGGCGAGCGCGTCCGTTAGCGGCTCCTTTCGGCTTCATCtacatgacctctgacctgtgaGTTCACGAGCCAACAGAAATCCGTGATCTCGCCGTCAGCGCCACCGCCTGGTTCCGAGTCGCCCGGCGATGAGTCACGTGACTCGACACGGCTGTGTTACGTgattgaagggaaaaaaaagtctggatCTGAGTGGAGGaat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU240804 lncRNA upstream 28031 741832 ~ 743740 (+) True G203339
TU240781 lncRNA upstream 33044 738339 ~ 738727 (+) True G203321
TU240757 lncRNA upstream 48079 684623 ~ 723692 (+) False thoc6
TU240779 lncRNA upstream 82121 680901 ~ 689650 (+) False thoc6
TU240788 lncRNA upstream 85141 679778 ~ 686630 (+) True G203328
TU240820 lncRNA downstream 31176 805200 ~ 806345 (+) False setd1a
TU240822 lncRNA downstream 31176 805200 ~ 805855 (+) False setd1a
TU240833 lncRNA downstream 43367 817391 ~ 884366 (+) True G203357
TU240787 lncRNA downstream 284655 1058679 ~ 1060521 (+) True G203327
XR_004579335.1 lncRNA downstream 287166 1061190 ~ 1078426 (+) True LOC117598762
XM_034309754.1 mRNA upstream 38881 726729 ~ 732890 (+) True si:dkey-16l2.17
XM_034309733.1 mRNA upstream 45486 717617 ~ 726285 (+) True kat8
XM_034310156.1 mRNA upstream 54752 707738 ~ 717019 (+) True rnf25
XM_034309755.1 mRNA upstream 66318 690189 ~ 705453 (+) True si:dkey-16l2.16
XM_034310155.1 mRNA upstream 82354 666808 ~ 689417 (+) True thoc6
XM_034309705.1 mRNA downstream 4816 778840 ~ 806153 (+) False setd1a
XM_034309704.1 mRNA downstream 4889 778913 ~ 806153 (+) False setd1a
XM_034309703.1 mRNA downstream 4919 778943 ~ 806153 (+) True setd1a
XM_034309744.1 mRNA downstream 38002 812026 ~ 849880 (+) False hsd3b7
XM_034309745.1 mRNA downstream 44637 818661 ~ 849880 (+) False hsd3b7
TU240808 other upstream 13713 753275 ~ 758058 (+) False fus
TU240780 other upstream 38917 726807 ~ 732854 (+) False si:dkey-16l2.17
TU240792 other upstream 61328 707774 ~ 710443 (+) False rnf25
TU240776 other upstream 94932 672224 ~ 676839 (+) False thoc6
TU240520 other upstream 244151 524812 ~ 527620 (+) False LOC117598976
TU240783 other downstream 272781 1046805 ~ 1051139 (+) False armc5
TU240880 other downstream 446488 1220512 ~ 1236612 (+) False paqr4a
TU241205 other downstream 579310 1353334 ~ 1356327 (+) False kmt5c
TU241220 other downstream 787570 1561594 ~ 1591075 (+) False syt3
TU241504 other downstream 1109051 1883075 ~ 1885478 (+) False ccndx

Expression Profile