RNA id: XM_034309721.1


Basic Information

Item Value
RNA id XM_034309721.1
length 2873
RNA type mRNA
GC content 0.55
exon number 17
gene id fus
representative True

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 753067 ~ 774250 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

atcatcatcatcatcatcatgtgatCATTTCATGCTTCTGTGTAAAGCGTTAATTAATTCCGCTTTAGCTAAAGctgcattttccttttttataacTGAGCCGTATCGGAGGCGGGCCCAGTGTCAATCATTTGGCGCGGGAGCCAATCACCTTACTGCTTTGTTGcagcatcagccaatcacgtagcAGCTCCACTGTGTCCTGTGCagctcagtgctgctgaagcGCGAGACGGTTTATTGCTGCAGGGACGCTGTTAACAACAAACTTTATATTAGCTTTAAAATCATCAAATCACTTTAATAAAACGTCGCTTTTACAGACTTTTACAGTAAAAACATCAGTCATGGCGTCAAGTGATTATTCTCAGAGCTCCAGTCAGGGCGGGTACGGAGGATATGGAGGTCCGTCCGGTCAGAGCTACAGCCAGCCGGGTTACGGAGGATACGGCCCGGGTTCGGGTTCGGGTTCGGAGTCGGACAGCAGCCCCGGACCTTACGGTCAGGGATACGGCTCCAGCTACAGCTCGGGTGGATACGGTTCGCCGCCGCCCTCGCAGTCCTACAGCTCGGGTGGCGTTAACAGCTGCAGCAGTCCGTCTCCTCAGGGAGGAGCGTACAGTCAGCAGTCCTCCTACTCCGCCTACAACCAGCAGCAGTCGCCTCCCGGCTCCGCTTcgagCTACTCCAGCGGCTCTCAGTCATCAGGCTTcggacagcagcagccaggaggcgGGTACGGAGGAGCGAGCGGTGGCTACGGCGgcggcggaggaggaggaggaggtggaggtggaggtccGAGTGGAGGATACGGAGGGAGCGGAGGACAACACCAGTCCTCTCAGCACGGTGGGAGTCTTTACAGTCAGCCGCCCGGTTACTCCTCGTCTCCTCCTCACGGCTACGGCCAGCAGAGTCAGTACGGACACGGGACAGGGTACAGTCAGGACGCCCCGCCCGTGAGTGTGGGCGGAGCGAGTTACGGCGGTCAGGACGAGCGGTATGGACAGGATGTGCGCGGTGGGCGTGGTCCACGCGGAGGGGGAGGCGGCTTCGGCGGACGAGGAGGAGGCGGATTTGAGCGAGGGGGCCGCGGAGGACCTCGAGGCCGAGGCGGAATGGGAATGGGCGATCGTGGAGGATTCAATAAGTTTGGTGGACCTCGGGATCACGGACCCGGTGGCTCCAGCAtgCAGGAGCAGGATAACTCCGACAACAACACCATCTTCGTGCAAGGCCTGGGAGACGACTACACCGTGGAGTCTGTAGCCGACTTCTTCAAACAGATCGGCATCATCAAGATGAATAAGAAGACAGGCTTGCCTATGATAAACCTGTACACGGACAGAGAGACGGGGAAGCTGAAAGGCGAGGCGACCGTGTCCTTCGATGATCCTCCTTCTGCTAAAGCCGCCATCGACTGGTTTGATGGTAAGGATTTTAACGGCAGCCCCATTAAGGTGTCCTTTGCCACTCGGCGGGCGGACTTCGggcgaggaggaggaggaggaggaggaggaggcatgAGGGGAGGACGTGGCCGAGGAGGTCCGATGGGAAGAGGTGGGTTTGGAGGAGGTagaggtggtggaggaggtggaggaggaggaagtggtggtggtggtggtttccCTGGTAACAGTGGAGGCGGCGGAGGCCAGCAAAGAGCAGGAGACTGGAAATGTTCAAAcccGTCGTGTGGGAACCTGAACTTCTCGTGGCGTAACGAGTGTAATCAGTGTAAAGCTCCAAAATCTgaacgaggaggaggaggaggaggaggaggaggaggagggacgCCCCCTATGGGAGGTGGGTTTGGTGGGGAGCGTGAGCGCGGAAGGGGCGGGTTCGAGCGCGGTGGGTTCCGCGCTCGCGGAGGAGGAGACCGAGGCGGATTCAGAGGAGGCAGAGGAGGAGACCGAGGAGGATACGGCGCCGGCAAGATGGACTCACGGAGTGATCACAGGCAGGAGCGGAGAGAGCGGCCGTACTGATCCGTTCAGACTCTAAACCGGGACCAGAGTCGCGTTTCTCACCGGGTTAAAGCGTTCGTTTCTCCTGAGGACGCGACTCTCTGACACCTGGACTGTTCCTAATCGCATACTCTATACCCTTTTCCTGTCACATGACACGACCAAAGCTTTGGAGACGAGTCTAATCCCGTCTGATGAAGACTTTATACTCGGACTTTCTTTCTTACGTTAAACACGAGATTCCCGTTTTGCGTTTGAACTCTGGGGTTCATCAGTAGAACATGTTACTGTGTTGTGCATCATTTCGAAGCTTTATTTCCTCTCTGACGCGTGCGATTGGTTTTCTCTCCTCTGCGTGTTTATCCGTTTAACGTAACAGTCATTTGAAAAGTGTTGGACATTTACGGTTCAGTCGCGGCGTTTGTGAGACGTCGGTTCCTCGGTGCGGCGATACGAGACGTCAGAGAGGCGAGCGCGTCCGTTAGCGGCTCCTTTCGGCTTCATCtacatgacctctgacctgtgaGTTCACGAGCCAACAGAAATCCGTGATCTCGCCGTCAGCGCCACCGCCTGGTTCCGAGTCGCCCGGCGATGAGTCACGTGACTCGACACGGCTGTGTTACGTgattgaagggaaaaaaaagtctggatCTGAGTGGAGGaatgaaaaatctgtttttttttttataatttttggGCAGGTGGAGCGCGGCGTGATTGTGGTGTGTGTCACTATTTAATATCTTTCATCATATAGACTAGACttcatcattttaaatttaaattaaattaatctaaATTAAGTATTTTGTGTTGCTGTTTGAAGCAGTtaactgatttgttttgtttcagtttgatgtcagtaataaaagtaaaaactgtTTTCTggtc

Function

GO: NA

KEGG:

id description
K13098 TLS, FUS; RNA-binding protein FUS

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU240804 lncRNA upstream 9327 741832 ~ 743740 (+) True G203339
TU240781 lncRNA upstream 14340 738339 ~ 738727 (+) True G203321
TU240757 lncRNA upstream 29375 684623 ~ 723692 (+) False thoc6
TU240779 lncRNA upstream 63417 680901 ~ 689650 (+) False thoc6
TU240788 lncRNA upstream 66437 679778 ~ 686630 (+) True G203328
TU240820 lncRNA downstream 30950 805200 ~ 806345 (+) False setd1a
TU240822 lncRNA downstream 30950 805200 ~ 805855 (+) False setd1a
TU240833 lncRNA downstream 43141 817391 ~ 884366 (+) True G203357
TU240787 lncRNA downstream 284429 1058679 ~ 1060521 (+) True G203327
XR_004579335.1 lncRNA downstream 286940 1061190 ~ 1078426 (+) True LOC117598762
XM_034309754.1 mRNA upstream 20177 726729 ~ 732890 (+) True si:dkey-16l2.17
XM_034309733.1 mRNA upstream 26782 717617 ~ 726285 (+) True kat8
XM_034310156.1 mRNA upstream 36048 707738 ~ 717019 (+) True rnf25
XM_034309755.1 mRNA upstream 47614 690189 ~ 705453 (+) True si:dkey-16l2.16
XM_034310155.1 mRNA upstream 63650 666808 ~ 689417 (+) True thoc6
XM_034309705.1 mRNA downstream 4590 778840 ~ 806153 (+) False setd1a
XM_034309704.1 mRNA downstream 4663 778913 ~ 806153 (+) False setd1a
XM_034309703.1 mRNA downstream 4693 778943 ~ 806153 (+) True setd1a
XM_034309744.1 mRNA downstream 37776 812026 ~ 849880 (+) False hsd3b7
XM_034309745.1 mRNA downstream 44411 818661 ~ 849880 (+) False hsd3b7
TU240780 other upstream 20213 726807 ~ 732854 (+) False si:dkey-16l2.17
TU240792 other upstream 42624 707774 ~ 710443 (+) False rnf25
TU240776 other upstream 76228 672224 ~ 676839 (+) False thoc6
TU240520 other upstream 225447 524812 ~ 527620 (+) False LOC117598976
TU240434 other upstream 483247 267579 ~ 269820 (+) False prl
TU240783 other downstream 272555 1046805 ~ 1051139 (+) False armc5
TU240880 other downstream 446262 1220512 ~ 1236612 (+) False paqr4a
TU241205 other downstream 579084 1353334 ~ 1356327 (+) False kmt5c
TU241220 other downstream 787344 1561594 ~ 1591075 (+) False syt3
TU241504 other downstream 1108825 1883075 ~ 1885478 (+) False ccndx

Expression Profile