RNA id: XM_034309703.1


Basic Information

Item Value
RNA id XM_034309703.1
length 8120
RNA type mRNA
GC content 0.58
exon number 21
gene id setd1a
representative True

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 778840 ~ 806345 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CCATGGCGGCTCTCTGTATTATTCACTCTTCTTTTGCGCTTGGAGGTGAAATTTAAAGGTTTGTGAGCTTTCGGTTTTGGACCGGAACTCAAGCGACGCTTTCTGAGATGCGACTTTGGATCTGAGTAGGTGGAAAAACTGAGCATTTTGTTTTGCGCGGAAGGAttttgttaataGCATGGATCCAGACAGCGGGGCGGACACCCAGCGAACTCTCAGCCTGCAATGGAAGAGCTACAAACTCCTGCAGGACCCGGCCATCCGCAGGGTCGCTCAGAAGATCTACAGATACGACGGGATTCACTTCAGCGTCCCGGACTCAGGGTTTCCTCCTGTGGGGGAGTTACGTGACCCTCGACCTCGGCGGATCTGGTCCAGACACACGGAGATGTCTCTTCCTTTGCCCAAGTTTAAGTTGGACGAGTACTACGTGGGTCCCATCCCGCTGAAGGAGGTGACGTTCGCTCGGCTGAACGACAACATCAAAGAGCCCTTCCTGTTAGAGATGTGCACTAAATTCGGCGAGGTGGAGGAAATGGAGATCCTGTTCCACCCCAAGACACGCAAGCACTTGGGTTTGGCGCGTGTCCTGTTCACCAGCACCAGAGGGGCCAAAGACACGGTCAAACACCTGCACAACACCTCCGTCATGGGCAACATCGTCCACGCACAGCTCGACATCAAAggccagCAGAGGATGAAGTATTACGACCTGATCGTCAGTGGGTCGTACACACCTCAGACTGTACCCACAGGAGGAAAAGCCCTGAGCGAGAAGTTTCAGCCCCCTGCTCCGGCGCAGCAGCCCGACACCtcgtCTGATATCAGGCGGAAGCTCTCTACCGATCAGATGCCGGTCCCGCCGCTCGGCAGCACGACCCCGTGCTCCGTGGACACCGCATTTGGGGAGCAGCGGTTAGACACGCCGCCGTCCTCCCTCGGGGGGCCGTACACGCCGGGCTCCTCGTGCTCCTCGCAGGGAGGCGGGACTCCGTACACTTCACGCTCCGGAACCCCCTTTTCCCAGGATTCGGGATACTCCGGGGGCAGGCACGGAGGTTACAGCGGCGGTCCCGTGGGCGGCGGTTTTCCCGCGCAGGACATGCTCCCTTCATCCTCCTGCTCCTCGTCCGCCGTGTCGTCCTCGTCCGGGTTCAAGCCTCGCTATTACGACGAGCCTCACGGAGTTCCTCCTCAAGACCCCGCGGCGTACCACCGAGGTCGGCCCGGGTTCCCTCCTCCCCCTCCGCTTCCCTGTTACCCCCCGTATCAGAACGCCGGCGCCGCTGGGATGCACATGCCCCCCCACCCTCACATGCCCCCCTCGGGCTCCCTGTACGAGTCTCCGCCCGTGGCCGAGCGAGAGCGGGACAGGGAGCGAAACCGAGACCGGgcgcagagagacagagaccgGGAGCGGGAGCGAGACGCCGGCGGGCGCTACGGAGCGTCTCGCCGCTCCTCTTACCACCACCAACAGGACGTAAACTCCTCGACCAAGTCCTCCTACCATTCGCACCACTCGCACCGGGAGGAGCGGGACGGCCGGTCGTACCGCAGGGACAGCTCGGCGTCCAGGGAGCACGGAAGGCACCGGAACCACCACCACTCGCACAACCACCACGGACGGAGGAGGGACAGCAGGGACAGGGACGGCGATTACGCGAACAGCTCCGACCCACGAAACAGAGGCCACGCCAACTCCACCCATCGCTCCTCCAACAGCATGTCTCCTCCACCCGCCTCGTACGGAGGATACAATCCGTCTAAAGAGCTGCCGGCCCACGACACTCCGTCTTCGTCCCGCCTGGAGCCGTCCCCCTCCTTCAGGtcgggagagagagcgagcggaAGCGGAGATAACGATTATCGGTCCCACCACGCGCCGTtacaccctcctcctcctccaccgcCTCCTCCTCTACCTCCCGCCTCCGTCATCGCGGCGGCGGTGGCTGAAACTCTGAGCTCGCTGGACTTCGGGCAGGAGAGCCCGGTCCGAGAGGAGCAGTGGAGCAAACCCAAACGGCGCCCCAGCACGCCGCCGCAGCCCCCGCGCACCCCTCCGCCCTCCTCCCCGCCCCACGCCTCCGTCCCGTCATCATCCACGTCACCATCCTCCACCTCTCTGCCTCACCACCACCCCTCCTCCACGGCGTCGCTGTCCCCGCCCCACGCGCAGCGAGACTCCTCCTCCCCGGAGCCGGACTCCACCAACGAGAGCCTCCCGTTCGTTCACCACTGCAGCAGTTTGGACTCGCGCATCGAGATGCTGTTAAAGGAGCAAAAATCCAAGTTCTCCTTCCTCGCCTCCGACGACGAGGACGAGGAAAAGAAGGACGAGGGCGCCCAAGGAGGCTCGAGGAAGCTGAGGGAAGagggaggagacagagagatggacgGAGGACAGCAGAGGAGAGCGGACAGGAGGAGCAGGGTGAGAAAACAGACAGCGCCGccaggtggaggaggaggagatggaaggAAAAGCCCTACGGATATGGCGTCCTCCGCCGCCTCCATCTCCGGATCGCTGTCGGAGACGACGCAGGGGCAGCAGGTCCTCGTACAGGAGGAACACGCAGCATCCGACTCGCAGAACGTGACAGGTGCACACACACCGCCCACCTACAATGGAGAGCGACAGCCGTCTCCTCATTCCTCCGGAGAAGACATGGAAATCTCTGACGAAGACGACGGCGGCGGCGACGGCGGCGGCATCGCTACGGTGGCGCAGCACCACGCTTCGTCGTCCTCCTCCCCCGCTCCGTCGTCTCAGTCGGCGCTGCCCTCTCAGAGCGCCGACCCGTCGTCCGGCTCGCCCCCGGACAGCACGCAGCACTTCGGCGCCTCCATGCCGCTCCCTCACATGCCCTCTTACCCTCCCCACCTGCCCCCTCCTCCCCCGCCCGGCTTCTCTCTCCAGCCCCCGCCCCCGCCCCCGGGCGTGCCCCCTCCCCTGCCCCACATGGAGCTCCACCCGGAGTACCCCATGCCCCCCCACCTGTACGACTACGCCAACTCCGTGGAGCTGATGAGCCAGTACGCCGGGACGTCCTTCCAGATGCAGGCGCACATGCTCAGCCGCCTGCACCAGCTGCGAGAAAAACACGCGCCCGGTTCCGAGTACCCGCCCTCTTACCACCTCCACTCTCTGCCCCCTCCCCCGCACGCGCCGCACCCCCACCACCCCTACATGGACCAAGACGGAGCTGCAGGGAACCACTACGACCAGGACCACCGCTACATGCCTCCTCACATGCCCACGTACCCGTACCCGGACCCCCACGCCGCCCAGCTGCCCCCTCACCACCCGCACGCCATGCCTCCGCCCCCTCACTCCCCGTGGCCTCCTCACGTCCTGCCCCAGCACTACCCCTCCCACTACCCGCCCCCGGCGTACGGCGCCGTGCCGGGCGTAGACGGCGAGCAGTACCCCATGACCATGATGGGTCAGAACCCTCACGAGGCCACGGTCCAGCTGGTTCTCTCTGCTCTCATCGACGAGATGAAGAACATCATGCAGAGGGACCTGAACCGCAAAATGGTGGAGAACGTCGCCTTCGGAACCTTCGACGAGTGGTGGGAGCGTAAAGAGCGGAAGGCCAAGCCGTTCCAGACCGCGATGAGGGGCGTGACGGCGGTGCGGGacgaggagaagaaggaggagaagacgACGAGCAGCCGGCCGCGCGAGCCGCTGATGTCTCTGGTGGACTGGGCCAAGAGCGGAGGCATGGAAGGGTTCTCTCTGCGCGGGGCTCTGCGTCTGCCTTCGTTCAAGGTGAAAAGGAAAGAGCCTCAGGAGCTGGCGGAGGACGCGACGCTGAAACGAGTCAGACCTTCAACTCCACCAGACGAGGAGGACGAAGACTCGTACCAGGGTAAAGTGTCCGACAGCGTGAGCCGGCCGGAGGAGACCCGAGCAGCCGAGAGAGACGCGGTACAGAGGAGAAAAAGACCCAAACCACGTAAACCTTACGATCTGGACAGTGAAGGAGAGGAGACGTCCGACGAGTCGCCTTctgaaaaggaggaggatgaagacgACAGCGAGAAAGACGAGTCCGAGGACGAAGCCCTCAGCGCGGACAGCGACGACGAGAGCCTCTCCTCTTCATCCGAAAGCTTGTCAtcgtcctcttcctcctcctcgtcGTCTTCATCCTCGgacgaggacgaggaggagCTGGAGCGGGCAGACGAGAGCGAGGCCCTGGACACGATGGACGAGTCGACGATGGACAGCGTTGCCGTGGAGAAGGAGAAGGTGAAGACGAGCGTCGGCGAGTCGCCTGCCGTCGCTGCCGCAGAGGTCAAAGCAGaagaTAAGATGGCCCCTGCTGCGTCTGCAGATCACCGGCCGCCGTCTCCTCCTTGTCCTCGGCCGTCTTCTCCCATCCTGCCTCCTCTGAAGAAGCGCCGCAAGACCGTGTCCTTCTCCATGGAGGAGAGCGAAGCCAAACCCTCCATCCACGTCCCTGCTGCACCTCTCTCTCCGTCCTCCGCCTCCTCCGCCGCCGCTTCTCCATCCCTCCTCCTTTCTCCGGTCAAATCACAGCCGCCGGATCAGCTGATTTCATCATCGCCGACCACCGTCGCTCCGACCGCGTCCTCCAAACCTGCCCCGATGCTTCGCCCTTTTGCTTCGCGCCCGACcaaggccacgcccccttcagcCTCACCCACTTCGGTTCTCACGGTCCCGCCTCCTGTGCGCTCGCTGCGTCCGGAGGAACCCAGGAAACGTTCTCCGTCGCCGCAGACGACCCCCGCCAAGTCTCCTTCCAGACGCGGCAAGGAATCCCCCAGAACCCCTCCCACTCCCGTCTGTCTCACAGTCCAGAACCTTCCGTTGGACCACGCCTCTCTGGTCCGGGTGGCCTATGAAGACCCCGCCCCCATCCCTCCAACGCCCAATCAGAAAGGGCGTCCACGCGGCAGGCCTCGGACCGTCAGCTTGTCAGCTCCCTCCACGCCCTCGCTGCTGGAGGAGGatgagtttgatgatgatgatgatgaagaggagctTCTGAATCAGGGGCTGAAGCTCAGGGAGCAGCTCGGAGCGTCCTGTTTGCTGCAGCTGGCCTCCGCGTCCACGCCCGACCTCTCCGTGCTGGCCCACGTGGCCGCCGAGATGGACGCGGACGAAGACGTCGACTCGGAGGAGACGGAGACATCAGACGAAGCCGAAGAGCACAAACTGGAGGAGGACGAGGAATCGCGTCTCTTCCCGTTGGATCCGGGCGGAATGCTCGTCCTCCAGGAGCACAACTACTCCAAATCCGCAGCCTTCCTcgctcctcctctttctcctgctTCCTCTGCCGCACAAAAGAGGACGAAACAGGACGCGGCGGTGCTGCTCCCCACAGACTTCCATCAGCACTGCGTCCAGGAGGCTCCGGAGGAGGTGATCGGAGACGCTCAGACGGACACGCCTGAGCTCTACGGCGTGGGGCTCGTCGGAGACGATGCCGGAGATCCGGCCGAGGTGCAGGCGCTCAGCCCGGTTTCCAAACGCAGAGGCTCGTTCAAGAGGGAGGAATCCGTGGAGAAAGGGAAGAGTAAAAAGAGGACTCGGAAAGACAAAGAGAACGTGGAGCTGCAGCCCGCTAAAAAGCAGAAGCAGGAGCACGGCAGGAAGCAGAGGAAAGGGAAGTTAgagGACTTCGCCCCGGAGGAGGACGTGGACGTGGAGCAGCTGGAGACGGCCGATCTGTCCAGCTCCAGCTCCGATTCGGCCGACTCCGACTTCGGCCTGGACGAGCACCTCGGGTTCGAGCGCGAGGAGGTGAGGAAAAGCGAGCGTCTCTTCCTGCAGGAAGCCGGAGTCACGCCGTCCACCCAGAGGAAGTCCAGCCTGGCTCCGCCCCCTCTCCCGATCTCGCAGTGCTCGTTCAAGCAGCGCAGCGAGTTCGAGCAGATGACCATCCTGTACGACATCTGGAACACCGGGCTGGACCAGGAGGACATGCGTCTCCTGAAGGTCACGTACGAGAAGCTGCTGCAGGACGACCACAACACGGACTGGCTCAACGACACGCACTGGGTCCCTCACACTATCACTAACATCCCGAACCCGCGGCGTAAGAAGAAGGCGGCGGACGGGCAGCTGAGGGAGCACGTCACGGGATGCGCCCGCAGCGAGGGTTATTACGCCATCAGCCGCAAAGAGAAGGACGTGTACCTGGACCTGGACCTCCCCGAGGCCGTGCAGGAAGCTGTGGACTACGACGTGGCGggctCGAACCGTGTGCTGTCGGAGAGGCGCTCGGAGCAGCGGCGTCTCCTCAGCGCCATCGGCACGCCCGCCGTCATGGACTCGGACCTGCTGAAACTCAACCAGCTCAAGTTCCGCAAGAAGAAACTGCGCTTCGGTCGCAGCCGCATCCACGAGTGGGGTCTGTTCGCCATGGAGCCCATCGCCGCGGACGAGATGGTCATCGAGTACGTGGGTCAGAACATCAGACAGATGGTGGCTGATAATCGGGAGAAGCGCTACGCTCAGGAAGGCATCGGGAGCAGCTACCTGTTCCGTGTCGATCACGACACCATCATCGACGCCACCAAATGCGGAAACCTGGCTCGCTTCATCAACCACTGCTGCACtCCGAACTGCTACGCGAAGGTGATCACCATCGAGTCCCAGAAGAAGATCGTCATTTACTCCAAGCAGCCCATCGCCGTGAACGAGGAAATCACGTACGACTACAAGTTTCCCATCGAGGAGAACAAAATCCCCTGTTTGTGCGGAACGGAGAACTGCCGAGGAACGCTCAACTAAAGCCCCGCCCTCTCCCCTCCCCCTTTCCCCACTGCAGGACAGCCGCACAGCATTATGGGTAAACATGTCTCGGGAGTAAATACCACAGCTTGGATACATTTCCGTTGTTTTATTATAGCTAACGGACATGACACGCCCACAGTGTGTCTCCATAGCGACGCCATTtcctaaggttttttttttttttttttctccctccctctcagaGCTCTGATTGGTGGATTCCGAtcatatttaaactttttttttttttttttaaaagcacgGATCTGTTTTTGAAGTattgtcattaaaaaataaataaaaaatcctccTTCCTTGTCACCTGTGCAAAAATAATGGCACCCACAAGAGGTTCAGAACAACGCGggctttatttttcacttcctgtctcgGGCGATTCTTTCAGCTTAAAGGTGAACGAGTCCAGAAAGACGCTccgctattattattattattattattattattagttgttagttgttattattagctTCTAGACTTATTTTTCTCCCAATTTTggccattttaaaataatttcagacAATAAACTAAGCCATAAAAGGAACGTTCCTGTAGCTACATCGTGACGTTGCATCTACGCCCTGTAGTTAACGTTTAactttacaaattacaaattcatCAATCGTAGCgcattatatttgtatatatatattttccccgTAGCTAACCACACAGCTCGGTGTTAGTGTTATcgtagctaatgttagctagcaaatCATATTGAACTTTATTTTCTGTAGttagctgtttgtttttttagctaATAAACTCCCCTTGTTGtaactctagctagctaataatcaataattatcATCAAACCAAAGGAAACATCCGTGCTTTATACGGGATTGTTAcgtaaacaaattttttttatcgttaaaattaatttttcagtCTGCCGCGTGACTATGACGTGACGTAAGTATTTTTAGACAGTGGAGTAAACTGCTAGCTAAGCGAAAACTACAGAAAAGTACCTGGCATTGtcgttaaaaaaaagagaaaagagaatacgacagaatttaataataataataataataataataataatagagagTTTCTGGATCGTTGTTTTCATTCTCACGTGATTTATTTTATCATATCAATATTTccgaacttttttttttttttttttccagtcctGCAGGTTTAAACTCCTcccacttttttccatttttcttcacGACACGGCGCTCAGCGACTTCTTTCAAAAGGACAccatgtaatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtatatatataaataatatcattacAGACTCGCacataaaagcaaaaa

Function

GO:

id name namespace
GO:0032259 methylation biological_process
GO:0005634 nucleus cellular_component
GO:0003676 nucleic acid binding molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0018024 histone-lysine N-methyltransferase activity molecular_function

KEGG:

id description
K11422 SETD1, SET1; [histone H3]-lysine4 N-trimethyltransferase SETD1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU240807 lncRNA upstream 4919 771771 ~ 774024 (+) False fus
TU240804 lncRNA upstream 35203 741832 ~ 743740 (+) True G203339
TU240781 lncRNA upstream 40216 738339 ~ 738727 (+) True G203321
TU240757 lncRNA upstream 55251 684623 ~ 723692 (+) False thoc6
TU240779 lncRNA upstream 89293 680901 ~ 689650 (+) False thoc6
TU240833 lncRNA downstream 11238 817391 ~ 884366 (+) True G203357
TU240787 lncRNA downstream 252526 1058679 ~ 1060521 (+) True G203327
XR_004579335.1 lncRNA downstream 255037 1061190 ~ 1078426 (+) True LOC117598762
TU240861 lncRNA downstream 304376 1110529 ~ 1110847 (+) True G203385
TU241190 lncRNA downstream 503244 1309397 ~ 1312989 (+) True G203635
XM_034309721.1 mRNA upstream 4693 753067 ~ 774250 (+) True fus
XM_034309754.1 mRNA upstream 46053 726729 ~ 732890 (+) True si:dkey-16l2.17
XM_034309733.1 mRNA upstream 52658 717617 ~ 726285 (+) True kat8
XM_034310156.1 mRNA upstream 61924 707738 ~ 717019 (+) True rnf25
XM_034309755.1 mRNA upstream 73490 690189 ~ 705453 (+) True si:dkey-16l2.16
XM_034309744.1 mRNA downstream 5873 812026 ~ 849880 (+) False hsd3b7
XM_034309745.1 mRNA downstream 12508 818661 ~ 849880 (+) False hsd3b7
XM_034309746.1 mRNA downstream 17821 823974 ~ 849880 (+) True hsd3b7
XM_026915992.2 mRNA downstream 59060 865213 ~ 882642 (+) True LOC113527857
XM_034309735.1 mRNA downstream 83108 889261 ~ 911910 (+) True syt17
TU240808 other upstream 20885 753275 ~ 758058 (+) False fus
TU240780 other upstream 46089 726807 ~ 732854 (+) False si:dkey-16l2.17
TU240792 other upstream 68500 707774 ~ 710443 (+) False rnf25
TU240776 other upstream 102104 672224 ~ 676839 (+) False thoc6
TU240520 other upstream 251323 524812 ~ 527620 (+) False LOC117598976
TU240783 other downstream 240652 1046805 ~ 1051139 (+) False armc5
TU240880 other downstream 414359 1220512 ~ 1236612 (+) False paqr4a
TU241205 other downstream 547181 1353334 ~ 1356327 (+) False kmt5c
TU241220 other downstream 755441 1561594 ~ 1591075 (+) False syt3
TU241504 other downstream 1076922 1883075 ~ 1885478 (+) False ccndx

Expression Profile