RNA id: TU240833


Basic Information

Item Value
RNA id TU240833
length 1180
lncRNA type read_through
GC content 0.44
exon number 3
gene id G203357
representative True

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 817391 ~ 884366 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AATAAATAAGACTAGAAAGTGAGCATGCTGTATGGTATTGAAGTATGAATGTATGTACAGCacgtgtacagtacagtataaagCGTACATGTATATAAGTAACATGAGCGTGTAGGTAACATCTCTTTTTGACAGACAGGAAGGAAGCgatgaagaaaaactgtttcacacatttgaccttgctgtggcacacacacacacacacacacacacacactgttttattacttatctaatAAGCAATTATCTTTGAAAAGATAACCTGTACACGCTCTGAAGAGTTTAACCATAACATACATTTGTTTAGTGCATTAGTCAACAGCAGGGTCTGTTTGGACATTCTGTAAAAGGAAACTGTACAAATAGGCCTCACtttttacaacacacacacacacacacacacacacacatgcatacacacttcTGATCCCTAGAGATACACCTCTACGgcttgttgccatggagacgGGGATTTCACGCCGGGGTCACCAGGTGGGCGAGTCGCTCCGTCCCACTGTGACTCATGagcaatattctgatattatttCTTCCCcccattttttcctttctttcgcaATCATGACGGatgttttgagttttttttttctttctctgttttccaCCTCAAACACGCCTGCACTCACGTACAGTGAGGAATCACACTTTTCAGGACATCTGAGTCATATAACAAGCTgaatctctgtctctcccacacacacacacacacacacacacacacacacacacacacacatacacacacatacacacacacgttgctCAACTACTCGAGTGAagttttgtttcacttcactttacttaaAAGCAGAACAGAATCTGAAATAAGGAAAGGAGCTCAGCACAGTTTAGCATGAAACAAGTGACGATACAGATACGTCACGGCTTTATACATATCACACGCGTGTGAGCGAgcgagtgagggagggagggagggagggagagagagtgggggAGTGAAcaagtgagtgaaagagtgaatgagggagtgagtgagggaatgagtgagggaatgagtgagGGAATGAGGGAATGATTGAGGGAGTGattgagtgagagagtgaatgagggAGTGAGCAAAGGAGtgagtgagggaatgagtgagggaatgagtgagggaatgagggagtgattgagggagtgagtgagagtgaatgaggga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU240820 lncRNA upstream 11046 805200 ~ 806345 (+) False setd1a
TU240822 lncRNA upstream 11536 805200 ~ 805855 (+) False setd1a
TU240807 lncRNA upstream 43367 771771 ~ 774024 (+) False fus
TU240804 lncRNA upstream 73651 741832 ~ 743740 (+) True G203339
TU240781 lncRNA upstream 78664 738339 ~ 738727 (+) True G203321
TU240787 lncRNA downstream 174313 1058679 ~ 1060521 (+) True G203327
XR_004579335.1 lncRNA downstream 176824 1061190 ~ 1078426 (+) True LOC117598762
TU240861 lncRNA downstream 226163 1110529 ~ 1110847 (+) True G203385
TU241190 lncRNA downstream 425031 1309397 ~ 1312989 (+) True G203635
TU241208 lncRNA downstream 478017 1362383 ~ 1441015 (+) True G203647
XM_034309705.1 mRNA upstream 11238 778840 ~ 806153 (+) False setd1a
XM_034309704.1 mRNA upstream 11238 778913 ~ 806153 (+) False setd1a
XM_034309703.1 mRNA upstream 11238 778943 ~ 806153 (+) True setd1a
XM_034309721.1 mRNA upstream 43141 753067 ~ 774250 (+) True fus
XM_034309754.1 mRNA upstream 84501 726729 ~ 732890 (+) True si:dkey-16l2.17
XM_034309735.1 mRNA downstream 4895 889261 ~ 911910 (+) True syt17
XM_034310159.1 mRNA downstream 56654 941020 ~ 997685 (+) True smg1
XM_034309756.1 mRNA downstream 115723 1000089 ~ 1014745 (+) True arl6ip1
XM_034309762.1 mRNA downstream 137560 1021926 ~ 1034215 (+) True elob
XM_034309708.1 mRNA downstream 149970 1034336 ~ 1056334 (+) False armc5
TU240808 other upstream 59333 753275 ~ 758058 (+) False fus
TU240780 other upstream 84537 726807 ~ 732854 (+) False si:dkey-16l2.17
TU240792 other upstream 106948 707774 ~ 710443 (+) False rnf25
TU240776 other upstream 140552 672224 ~ 676839 (+) False thoc6
TU240520 other upstream 289771 524812 ~ 527620 (+) False LOC117598976
TU240783 other downstream 162439 1046805 ~ 1051139 (+) False armc5
TU240880 other downstream 336146 1220512 ~ 1236612 (+) False paqr4a
TU241205 other downstream 468968 1353334 ~ 1356327 (+) False kmt5c
TU241220 other downstream 677228 1561594 ~ 1591075 (+) False syt3
TU241504 other downstream 998709 1883075 ~ 1885478 (+) False ccndx

Expression Profile